/usr/bin/doctrine.php is in php-doctrine-orm 2.4.6-1+deb8u1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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/*
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
 * OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
 * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
 * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
 * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
 * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 *
 * This software consists of voluntary contributions made by many individuals
 * and is licensed under the LGPL. For more information, see
 * <http://www.doctrine-project.org>.
 */
require_once 'Doctrine/Common/ClassLoader.php';
$classLoader = new \Doctrine\Common\ClassLoader('Doctrine');
$classLoader->register();
$classLoader = new \Doctrine\Common\ClassLoader('Symfony');
$classLoader->register();
$configFile = getcwd() . DIRECTORY_SEPARATOR . 'cli-config.php';
$helperSet = null;
if (file_exists($configFile)) {
    if ( ! is_readable($configFile)) {
        trigger_error(
            'Configuration file [' . $configFile . '] does not have read permission.', E_ERROR
        );
    }
    require $configFile;
    foreach ($GLOBALS as $helperSetCandidate) {
        if ($helperSetCandidate instanceof \Symfony\Component\Console\Helper\HelperSet) {
            $helperSet = $helperSetCandidate;
            break;
        }
    }
}
$helperSet = ($helperSet) ?: new \Symfony\Component\Console\Helper\HelperSet();
\Doctrine\ORM\Tools\Console\ConsoleRunner::run($helperSet);
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