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<title>Computer Assited Medical Intervention Tool Kit: AtomProperties Class Reference</title>
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<div id="projectname">Computer Assited Medical Intervention Tool Kit
 <span id="projectnumber">version 4.0</span>
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<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="#pri-methods">Private Member Functions</a> |
<a href="#pri-attribs">Private Attributes</a> |
<a href="#pri-static-attribs">Static Private Attributes</a> |
<a href="classAtomProperties-members.html">List of all members</a> </div>
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<div class="title">AtomProperties Class Reference<div class="ingroups"><a class="el" href="group__group__cepmodeling.html">CEP Modeling</a> » <a class="el" href="group__group__cepmodeling__libraries.html">Libraries</a> » <a class="el" href="group__group__cepmodeling__libraries__pml.html">PML</a></div></div> </div>
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<p>This class manages all the properties attached to an atom.
<a href="classAtomProperties.html#details">More...</a></p>
<p><code>#include <<a class="el" href="AtomProperties_8h_source.html">AtomProperties.h</a>></code></p>
<p>Inherits <a class="el" href="classStructureProperties.html">StructureProperties</a>.</p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a31a2cb2ce34e0ba3f3d97327c0b5e52a"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a31a2cb2ce34e0ba3f3d97327c0b5e52a">AtomProperties</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *<a class="el" href="classProperties.html#a5a00841ccbca52925d09553995cf1641">myPM</a>)</td></tr>
<tr class="memdesc:a31a2cb2ce34e0ba3f3d97327c0b5e52a"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor : set the position to the origin, and generate an unique index. <a href="#a31a2cb2ce34e0ba3f3d97327c0b5e52a">More...</a><br /></td></tr>
<tr class="separator:a31a2cb2ce34e0ba3f3d97327c0b5e52a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6ef5eed524f652885d997344084f9148"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a6ef5eed524f652885d997344084f9148">AtomProperties</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *<a class="el" href="classProperties.html#a5a00841ccbca52925d09553995cf1641">myPM</a>, physicalModel::AtomProperties xmlAtomProp)</td></tr>
<tr class="memdesc:a6ef5eed524f652885d997344084f9148"><td class="mdescLeft"> </td><td class="mdescRight">constructor from xml node: try to read and get the properties from xml <a href="#a6ef5eed524f652885d997344084f9148">More...</a><br /></td></tr>
<tr class="separator:a6ef5eed524f652885d997344084f9148"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a652c9a72a8bcb80400724f26e9d304ff"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a652c9a72a8bcb80400724f26e9d304ff">AtomProperties</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *<a class="el" href="classProperties.html#a5a00841ccbca52925d09553995cf1641">myPM</a>, const unsigned int ind)</td></tr>
<tr class="memdesc:a652c9a72a8bcb80400724f26e9d304ff"><td class="mdescLeft"> </td><td class="mdescRight">set the position to the origin <a href="#a652c9a72a8bcb80400724f26e9d304ff">More...</a><br /></td></tr>
<tr class="separator:a652c9a72a8bcb80400724f26e9d304ff"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afe8e3b046921b72805550135fdd122a8"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#afe8e3b046921b72805550135fdd122a8">AtomProperties</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *<a class="el" href="classProperties.html#a5a00841ccbca52925d09553995cf1641">myPM</a>, const double pos[3])</td></tr>
<tr class="memdesc:afe8e3b046921b72805550135fdd122a8"><td class="mdescLeft"> </td><td class="mdescRight">generate an unique index. <a href="#afe8e3b046921b72805550135fdd122a8">More...</a><br /></td></tr>
<tr class="separator:afe8e3b046921b72805550135fdd122a8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa7556def0df2aa64a0dc56f8e7bb2696"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#aa7556def0df2aa64a0dc56f8e7bb2696">AtomProperties</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *<a class="el" href="classProperties.html#a5a00841ccbca52925d09553995cf1641">myPM</a>, const unsigned int ind, const double pos[3])</td></tr>
<tr class="memdesc:aa7556def0df2aa64a0dc56f8e7bb2696"><td class="mdescLeft"> </td><td class="mdescRight">everything is given here <a href="#aa7556def0df2aa64a0dc56f8e7bb2696">More...</a><br /></td></tr>
<tr class="separator:aa7556def0df2aa64a0dc56f8e7bb2696"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a75ed95408ef175ec75249421391eda9d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a75ed95408ef175ec75249421391eda9d">getPosition</a> (double pos[3]) const</td></tr>
<tr class="memdesc:a75ed95408ef175ec75249421391eda9d"><td class="mdescLeft"> </td><td class="mdescRight">get the position of the atom (array of 3 doubles) <a href="#a75ed95408ef175ec75249421391eda9d">More...</a><br /></td></tr>
<tr class="separator:a75ed95408ef175ec75249421391eda9d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acee5ab1334e878fa629101358b5a747e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#acee5ab1334e878fa629101358b5a747e">setPosition</a> (const double [3])</td></tr>
<tr class="memdesc:acee5ab1334e878fa629101358b5a747e"><td class="mdescLeft"> </td><td class="mdescRight">set the position of the atom <a href="#acee5ab1334e878fa629101358b5a747e">More...</a><br /></td></tr>
<tr class="separator:acee5ab1334e878fa629101358b5a747e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aabcac33e880ca5c34c1b752fddfc6049"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#aabcac33e880ca5c34c1b752fddfc6049">setPosition</a> (const double, const double, const double)</td></tr>
<tr class="memdesc:aabcac33e880ca5c34c1b752fddfc6049"><td class="mdescLeft"> </td><td class="mdescRight">set the position of the atom <a href="#aabcac33e880ca5c34c1b752fddfc6049">More...</a><br /></td></tr>
<tr class="separator:aabcac33e880ca5c34c1b752fddfc6049"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5ca07fe5bf2264de30f1da65bfee1140"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a5ca07fe5bf2264de30f1da65bfee1140">setPositionPointer</a> (double *ptr, bool update=true)</td></tr>
<tr class="memdesc:a5ca07fe5bf2264de30f1da65bfee1140"><td class="mdescLeft"> </td><td class="mdescRight">change the position pointer. <a href="#a5ca07fe5bf2264de30f1da65bfee1140">More...</a><br /></td></tr>
<tr class="separator:a5ca07fe5bf2264de30f1da65bfee1140"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af84ae75eaeaad5729d5875671c6f6120"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#af84ae75eaeaad5729d5875671c6f6120">xmlPrint</a> (std::ostream &)</td></tr>
<tr class="memdesc:af84ae75eaeaad5729d5875671c6f6120"><td class="mdescLeft"> </td><td class="mdescRight">print to an output stream in "pseudo" XML format. <a href="#af84ae75eaeaad5729d5875671c6f6120">More...</a><br /></td></tr>
<tr class="separator:af84ae75eaeaad5729d5875671c6f6120"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a63ea2175c36a5c5370e7f3986063ef8b"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a63ea2175c36a5c5370e7f3986063ef8b">~AtomProperties</a> ()</td></tr>
<tr class="memdesc:a63ea2175c36a5c5370e7f3986063ef8b"><td class="mdescLeft"> </td><td class="mdescRight">the destructor... <a href="#a63ea2175c36a5c5370e7f3986063ef8b">More...</a><br /></td></tr>
<tr class="separator:a63ea2175c36a5c5370e7f3986063ef8b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classStructureProperties"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classStructureProperties')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classStructureProperties.html">StructureProperties</a></td></tr>
<tr class="memitem:a16b161b8e59a9ed15acd713baf4cde18 inherit pub_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top">unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a16b161b8e59a9ed15acd713baf4cde18">getIndex</a> () const</td></tr>
<tr class="memdesc:a16b161b8e59a9ed15acd713baf4cde18 inherit pub_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">return the unique index in the global structure <a href="classStructureProperties.html#a16b161b8e59a9ed15acd713baf4cde18">More...</a><br /></td></tr>
<tr class="separator:a16b161b8e59a9ed15acd713baf4cde18 inherit pub_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a424fa864b33071bff1e23a9dc8166ebd inherit pub_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">GeometricType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a424fa864b33071bff1e23a9dc8166ebd">getType</a> () const</td></tr>
<tr class="memdesc:a424fa864b33071bff1e23a9dc8166ebd inherit pub_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">Return the type of force. <a href="classStructureProperties.html#a424fa864b33071bff1e23a9dc8166ebd">More...</a><br /></td></tr>
<tr class="separator:a424fa864b33071bff1e23a9dc8166ebd inherit pub_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a989758e97c3249b5e8f769b353e8aefe inherit pub_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a989758e97c3249b5e8f769b353e8aefe">setIndex</a> (const unsigned int)</td></tr>
<tr class="memdesc:a989758e97c3249b5e8f769b353e8aefe inherit pub_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">set the index (BECAREFUL: it MUST be unique !!!) <a href="classStructureProperties.html#a989758e97c3249b5e8f769b353e8aefe">More...</a><br /></td></tr>
<tr class="separator:a989758e97c3249b5e8f769b353e8aefe inherit pub_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8c64143e52b2e5239c87343a888a918d inherit pub_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a8c64143e52b2e5239c87343a888a918d">setType</a> (const <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">GeometricType</a> t)</td></tr>
<tr class="memdesc:a8c64143e52b2e5239c87343a888a918d inherit pub_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">Set the force type. <a href="classStructureProperties.html#a8c64143e52b2e5239c87343a888a918d">More...</a><br /></td></tr>
<tr class="separator:a8c64143e52b2e5239c87343a888a918d inherit pub_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0dde5d5125630493e80625b0ebd5d90b inherit pub_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a0dde5d5125630493e80625b0ebd5d90b">StructureProperties</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *, const <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">GeometricType</a>)</td></tr>
<tr class="memdesc:a0dde5d5125630493e80625b0ebd5d90b inherit pub_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">the only default constructor : type must be set <a href="classStructureProperties.html#a0dde5d5125630493e80625b0ebd5d90b">More...</a><br /></td></tr>
<tr class="separator:a0dde5d5125630493e80625b0ebd5d90b inherit pub_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a10ecb29467c2d7a9cc61c00cc08c6470 inherit pub_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a10ecb29467c2d7a9cc61c00cc08c6470">xmlPrint</a> (std::ostream &) const</td></tr>
<tr class="memdesc:a10ecb29467c2d7a9cc61c00cc08c6470 inherit pub_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">print to an output stream in "pseaudo" XML format. <a href="classStructureProperties.html#a10ecb29467c2d7a9cc61c00cc08c6470">More...</a><br /></td></tr>
<tr class="separator:a10ecb29467c2d7a9cc61c00cc08c6470 inherit pub_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6edaa28c6ced40e3e7b2fc3f19be7a5a inherit pub_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a6edaa28c6ced40e3e7b2fc3f19be7a5a">~StructureProperties</a> ()</td></tr>
<tr class="separator:a6edaa28c6ced40e3e7b2fc3f19be7a5a inherit pub_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classProperties"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classProperties')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classProperties.html">Properties</a></td></tr>
<tr class="memitem:a20a68139af83de00e989198387927200 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a20a68139af83de00e989198387927200">getName</a> () const</td></tr>
<tr class="memdesc:a20a68139af83de00e989198387927200 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">get the name (be careful, this method DOES NOT return a copy, so you got the direct ptr to the name!!!) <a href="classProperties.html#a20a68139af83de00e989198387927200">More...</a><br /></td></tr>
<tr class="separator:a20a68139af83de00e989198387927200 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a316aad45126d00309435baa16037c524 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a316aad45126d00309435baa16037c524">getPhysicalModel</a> () const</td></tr>
<tr class="memdesc:a316aad45126d00309435baa16037c524 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">get the physical model <a href="classProperties.html#a316aad45126d00309435baa16037c524">More...</a><br /></td></tr>
<tr class="separator:a316aad45126d00309435baa16037c524 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a193c759907ba3e29799aa3f28fd8c868 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a193c759907ba3e29799aa3f28fd8c868">Properties</a> (const std::string n="")</td></tr>
<tr class="memdesc:a193c759907ba3e29799aa3f28fd8c868 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">A nice simple constructor, with a given name. <a href="classProperties.html#a193c759907ba3e29799aa3f28fd8c868">More...</a><br /></td></tr>
<tr class="separator:a193c759907ba3e29799aa3f28fd8c868 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6252bf62817cb2ae09efdfe03fe93d0f inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a6252bf62817cb2ae09efdfe03fe93d0f">Properties</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *, const std::string n="")</td></tr>
<tr class="memdesc:a6252bf62817cb2ae09efdfe03fe93d0f inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">Another nice constructor, with the PM and a name. <a href="classProperties.html#a6252bf62817cb2ae09efdfe03fe93d0f">More...</a><br /></td></tr>
<tr class="separator:a6252bf62817cb2ae09efdfe03fe93d0f inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a630adc42d8a4bd88d2ae7f8f527bf83e inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a630adc42d8a4bd88d2ae7f8f527bf83e">setName</a> (std::string)</td></tr>
<tr class="memdesc:a630adc42d8a4bd88d2ae7f8f527bf83e inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">set the name (use the string = operator) <a href="classProperties.html#a630adc42d8a4bd88d2ae7f8f527bf83e">More...</a><br /></td></tr>
<tr class="separator:a630adc42d8a4bd88d2ae7f8f527bf83e inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab7ad08175ea758b6beab31d4aa6f5b8b inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#ab7ad08175ea758b6beab31d4aa6f5b8b">setPhysicalModel</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *)</td></tr>
<tr class="memdesc:ab7ad08175ea758b6beab31d4aa6f5b8b inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">set the physical model <a href="classProperties.html#ab7ad08175ea758b6beab31d4aa6f5b8b">More...</a><br /></td></tr>
<tr class="separator:ab7ad08175ea758b6beab31d4aa6f5b8b inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9a4367c64d90a962fc260128587670dd inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a9a4367c64d90a962fc260128587670dd">~Properties</a> ()</td></tr>
<tr class="memdesc:a9a4367c64d90a962fc260128587670dd inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">The default destructor. <a href="classProperties.html#a9a4367c64d90a962fc260128587670dd">More...</a><br /></td></tr>
<tr class="separator:a9a4367c64d90a962fc260128587670dd inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6770198ffedb2a221f5b7d28bfc902a0 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a6770198ffedb2a221f5b7d28bfc902a0">xmlToFields</a> (xsd::cxx::tree::attribute_set< char > attrs)</td></tr>
<tr class="memdesc:a6770198ffedb2a221f5b7d28bfc902a0 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">convert the xml node parameters to data fields <a href="classProperties.html#a6770198ffedb2a221f5b7d28bfc902a0">More...</a><br /></td></tr>
<tr class="separator:a6770198ffedb2a221f5b7d28bfc902a0 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6a333801e00b87b115736fc10a7e81e6 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a6a333801e00b87b115736fc10a7e81e6">numberOfFields</a> () const</td></tr>
<tr class="memdesc:a6a333801e00b87b115736fc10a7e81e6 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">get the number of extra fields found in the PML <a href="classProperties.html#a6a333801e00b87b115736fc10a7e81e6">More...</a><br /></td></tr>
<tr class="separator:a6a333801e00b87b115736fc10a7e81e6 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2136bc1d10507282867bf69fa0a1b8ce inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a2136bc1d10507282867bf69fa0a1b8ce">isAField</a> (std::string attName) const</td></tr>
<tr class="memdesc:a2136bc1d10507282867bf69fa0a1b8ce inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">check if the field exist in the XML document, return false if it does not <a href="classProperties.html#a2136bc1d10507282867bf69fa0a1b8ce">More...</a><br /></td></tr>
<tr class="separator:a2136bc1d10507282867bf69fa0a1b8ce inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aadf1738fdbe4c37d2c25c9d54a21a636 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#aadf1738fdbe4c37d2c25c9d54a21a636">getField</a> (unsigned int) const</td></tr>
<tr class="memdesc:aadf1738fdbe4c37d2c25c9d54a21a636 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">get the name of field of given index <a href="classProperties.html#aadf1738fdbe4c37d2c25c9d54a21a636">More...</a><br /></td></tr>
<tr class="separator:aadf1738fdbe4c37d2c25c9d54a21a636 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0217383f4dfbc5a8b50c7ab62eb7cc64 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a0217383f4dfbc5a8b50c7ab62eb7cc64">getDouble</a> (std::string attName)</td></tr>
<tr class="memdesc:a0217383f4dfbc5a8b50c7ab62eb7cc64 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field accessor: get the field attName as a double value, if field does not exist, 0.0 is return <a href="classProperties.html#a0217383f4dfbc5a8b50c7ab62eb7cc64">More...</a><br /></td></tr>
<tr class="separator:a0217383f4dfbc5a8b50c7ab62eb7cc64 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7b29f37b03a9682783009bf93459f5aa inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a7b29f37b03a9682783009bf93459f5aa">getInt</a> (std::string attName) const</td></tr>
<tr class="memdesc:a7b29f37b03a9682783009bf93459f5aa inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field accessor: get the field attName as an int value, if field does not exist, 0 is return <a href="classProperties.html#a7b29f37b03a9682783009bf93459f5aa">More...</a><br /></td></tr>
<tr class="separator:a7b29f37b03a9682783009bf93459f5aa inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a98f7563c1f15ac71394d49f261020369 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a98f7563c1f15ac71394d49f261020369">getBool</a> (std::string attName) const</td></tr>
<tr class="memdesc:a98f7563c1f15ac71394d49f261020369 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field accessor: get the field attName as a bool value, if field does not exist, false is return <a href="classProperties.html#a98f7563c1f15ac71394d49f261020369">More...</a><br /></td></tr>
<tr class="separator:a98f7563c1f15ac71394d49f261020369 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3a48d3d852b712e5b83d03235923f3b1 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a3a48d3d852b712e5b83d03235923f3b1">getString</a> (std::string attName) const</td></tr>
<tr class="memdesc:a3a48d3d852b712e5b83d03235923f3b1 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field accessor: get the field attName as a string value, if field does not exist, empty string is return <a href="classProperties.html#a3a48d3d852b712e5b83d03235923f3b1">More...</a><br /></td></tr>
<tr class="separator:a3a48d3d852b712e5b83d03235923f3b1 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae80aac92260685f2dcfbdf7e91526b3a inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#ae80aac92260685f2dcfbdf7e91526b3a">get</a> (std::string attName, std::string &attVal) const</td></tr>
<tr class="memdesc:ae80aac92260685f2dcfbdf7e91526b3a inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field accessor: get the field attName as a string value in attVal, if field does not exist, empty string is return <a href="classProperties.html#ae80aac92260685f2dcfbdf7e91526b3a">More...</a><br /></td></tr>
<tr class="separator:ae80aac92260685f2dcfbdf7e91526b3a inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4415265831f28d7805120e2316935ca1 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a4415265831f28d7805120e2316935ca1">set</a> (std::string attName, double val)</td></tr>
<tr class="memdesc:a4415265831f28d7805120e2316935ca1 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field modificator: set field attName using a double value <a href="classProperties.html#a4415265831f28d7805120e2316935ca1">More...</a><br /></td></tr>
<tr class="separator:a4415265831f28d7805120e2316935ca1 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7b9961582e5eb0136ba436cbce7eb9dd inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a7b9961582e5eb0136ba436cbce7eb9dd">set</a> (std::string attName, int val)</td></tr>
<tr class="memdesc:a7b9961582e5eb0136ba436cbce7eb9dd inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field modificator: set field attName using an int value <a href="classProperties.html#a7b9961582e5eb0136ba436cbce7eb9dd">More...</a><br /></td></tr>
<tr class="separator:a7b9961582e5eb0136ba436cbce7eb9dd inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae250ed77e6a1dad9510247936b13ba57 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#ae250ed77e6a1dad9510247936b13ba57">set</a> (std::string attName, bool val)</td></tr>
<tr class="memdesc:ae250ed77e6a1dad9510247936b13ba57 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field modificator: set field attName using a bool value <a href="classProperties.html#ae250ed77e6a1dad9510247936b13ba57">More...</a><br /></td></tr>
<tr class="separator:ae250ed77e6a1dad9510247936b13ba57 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0e6e235fbfcfecc1d2ba8c8822514855 inherit pub_methods_classProperties"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a0e6e235fbfcfecc1d2ba8c8822514855">set</a> (std::string attName, std::string val)</td></tr>
<tr class="memdesc:a0e6e235fbfcfecc1d2ba8c8822514855 inherit pub_methods_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">field modificator: set field attName using a string value <a href="classProperties.html#a0e6e235fbfcfecc1d2ba8c8822514855">More...</a><br /></td></tr>
<tr class="separator:a0e6e235fbfcfecc1d2ba8c8822514855 inherit pub_methods_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a11abf58717a30ff6824be4d7359abc1b"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a11abf58717a30ff6824be4d7359abc1b">resetUniqueIndex</a> ()</td></tr>
<tr class="memdesc:a11abf58717a30ff6824be4d7359abc1b"><td class="mdescLeft"> </td><td class="mdescRight">Reinitialize the unique index to zero (usually that what you want to do when you start to load a new <a class="el" href="classPhysicalModel.html" title="This is the main class of this project. ">PhysicalModel</a>. <a href="#a11abf58717a30ff6824be4d7359abc1b">More...</a><br /></td></tr>
<tr class="separator:a11abf58717a30ff6824be4d7359abc1b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classStructureProperties"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classStructureProperties')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classStructureProperties.html">StructureProperties</a></td></tr>
<tr class="memitem:aadba0e47b44280cd0aa2140542acc0c5 inherit pub_static_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top">static std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#aadba0e47b44280cd0aa2140542acc0c5">toString</a> (const <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">GeometricType</a>)</td></tr>
<tr class="memdesc:aadba0e47b44280cd0aa2140542acc0c5 inherit pub_static_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">return the string equivalent to this geometric type <a href="classStructureProperties.html#aadba0e47b44280cd0aa2140542acc0c5">More...</a><br /></td></tr>
<tr class="separator:aadba0e47b44280cd0aa2140542acc0c5 inherit pub_static_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acf21ca15b9f355e73d10b4700af9405d inherit pub_static_methods_classStructureProperties"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">GeometricType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#acf21ca15b9f355e73d10b4700af9405d">toType</a> (const std::string)</td></tr>
<tr class="memdesc:acf21ca15b9f355e73d10b4700af9405d inherit pub_static_methods_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">return the enum corresponding to this string <a href="classStructureProperties.html#acf21ca15b9f355e73d10b4700af9405d">More...</a><br /></td></tr>
<tr class="separator:acf21ca15b9f355e73d10b4700af9405d inherit pub_static_methods_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:ae073f7c23edb17dc7898cb59e91805e0"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate</a> ()</td></tr>
<tr class="memdesc:ae073f7c23edb17dc7898cb59e91805e0"><td class="mdescLeft"> </td><td class="mdescRight">allocate the memory needed for the position (double[3]). <a href="#ae073f7c23edb17dc7898cb59e91805e0">More...</a><br /></td></tr>
<tr class="separator:ae073f7c23edb17dc7898cb59e91805e0"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:a3b6469ec7bb4210ce10d82a6a70babe7"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a3b6469ec7bb4210ce10d82a6a70babe7">allocated</a></td></tr>
<tr class="memdesc:a3b6469ec7bb4210ce10d82a6a70babe7"><td class="mdescLeft"> </td><td class="mdescRight">true only if the memory used for the position was allocated in the constructor and not changed afterwards <a href="#a3b6469ec7bb4210ce10d82a6a70babe7">More...</a><br /></td></tr>
<tr class="separator:a3b6469ec7bb4210ce10d82a6a70babe7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1d0dd72ca18de4ebca82c0f885bcb565"><td class="memItemLeft" align="right" valign="top">double * </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a1d0dd72ca18de4ebca82c0f885bcb565">X</a></td></tr>
<tr class="memdesc:a1d0dd72ca18de4ebca82c0f885bcb565"><td class="mdescLeft"> </td><td class="mdescRight">Pointer to the memory triplet that stores the atom's position. <a href="#a1d0dd72ca18de4ebca82c0f885bcb565">More...</a><br /></td></tr>
<tr class="separator:a1d0dd72ca18de4ebca82c0f885bcb565"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-static-attribs"></a>
Static Private Attributes</h2></td></tr>
<tr class="memitem:a2926922047406a8afab7b5590abf821d"><td class="memItemLeft" align="right" valign="top">static unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="classAtomProperties.html#a2926922047406a8afab7b5590abf821d">maxUniqueIndex</a> = 0</td></tr>
<tr class="memdesc:a2926922047406a8afab7b5590abf821d"><td class="mdescLeft"> </td><td class="mdescRight">unique number (used to generate unique index for atoms if not given at the instanciation) <a href="#a2926922047406a8afab7b5590abf821d">More...</a><br /></td></tr>
<tr class="separator:a2926922047406a8afab7b5590abf821d"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classStructureProperties"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classStructureProperties')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classStructureProperties.html">StructureProperties</a></td></tr>
<tr class="memitem:a9180a07ccc47844f526e879201d75731 inherit pub_types_classStructureProperties"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">GeometricType</a> { <br />
  <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a606927b36de060292ab110c0ffb8fda6">INVALID</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a10a947ffcd63f50787f75a33f512f2b1">ATOM</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a4e649a65336a327b2b6a38e937d6e26d">LINE</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731aafad539f241ab0931a414284f3658974">TRIANGLE</a>,
<br />
  <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a70cd9e366650ca00912d1cbe9b61eca2">QUAD</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a97b9c987bb76cf4e7cc9c0a0aa4704ce">TETRAHEDRON</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a74a53207505536ceb0ad64733d2a8a0b">WEDGE</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731ae55eaaa4a01ee2d554c70f2e785231bf">PYRAMID</a>,
<br />
  <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a1e936c531a196f8454c3a10bb7841e80">HEXAHEDRON</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a05442bd0a1696fd9414348c072a805df">POLY_LINE</a>,
<a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731ac6bd3ea86bc8cff47b41e36049649f96">POLY_VERTEX</a>
<br />
}<tr class="memdesc:a9180a07ccc47844f526e879201d75731"><td class="mdescLeft"> </td><td class="mdescRight">Geometric type gives information about which kind of geometric representation is the structure. <a href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">More...</a><br /></td></tr>
</td></tr>
<tr class="separator:a9180a07ccc47844f526e879201d75731 inherit pub_types_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classStructureProperties"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classStructureProperties')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classStructureProperties.html">StructureProperties</a></td></tr>
<tr class="memitem:aede0af0788fcc531cca23ff730306b62 inherit pro_attribs_classStructureProperties"><td class="memItemLeft" align="right" valign="top">unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="classStructureProperties.html#aede0af0788fcc531cca23ff730306b62">index</a></td></tr>
<tr class="memdesc:aede0af0788fcc531cca23ff730306b62 inherit pro_attribs_classStructureProperties"><td class="mdescLeft"> </td><td class="mdescRight">unique index in the global structure <a href="classStructureProperties.html#aede0af0788fcc531cca23ff730306b62">More...</a><br /></td></tr>
<tr class="separator:aede0af0788fcc531cca23ff730306b62 inherit pro_attribs_classStructureProperties"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classProperties"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classProperties')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classProperties.html">Properties</a></td></tr>
<tr class="memitem:a9db1af2b4dd5aa97e4941e533592ceb8 inherit pro_attribs_classProperties"><td class="memItemLeft" align="right" valign="top">std::map< std::string, std::string > </td><td class="memItemRight" valign="bottom"><a class="el" href="classProperties.html#a9db1af2b4dd5aa97e4941e533592ceb8">fields</a></td></tr>
<tr class="memdesc:a9db1af2b4dd5aa97e4941e533592ceb8 inherit pro_attribs_classProperties"><td class="mdescLeft"> </td><td class="mdescRight">map containing all the different fields (name, value stored as string ) <a href="classProperties.html#a9db1af2b4dd5aa97e4941e533592ceb8">More...</a><br /></td></tr>
<tr class="separator:a9db1af2b4dd5aa97e4941e533592ceb8 inherit pro_attribs_classProperties"><td class="memSeparator" colspan="2"> </td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>This class manages all the properties attached to an atom. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a31a2cb2ce34e0ba3f3d97327c0b5e52a">◆ </a></span>AtomProperties() <span class="overload">[1/5]</span></h2>
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<td class="memname">AtomProperties::AtomProperties </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> * </td>
<td class="paramname"><em>myPM</em></td><td>)</td>
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<p>Default constructor : set the position to the origin, and generate an unique index. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
</table>
</dd>
</dl>
<p class="reference">References <a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate()</a>, <a class="el" href="classStructureProperties.html#aede0af0788fcc531cca23ff730306b62">StructureProperties::index</a>, <a class="el" href="classAtomProperties.html#a2926922047406a8afab7b5590abf821d">maxUniqueIndex</a>, and <a class="el" href="classAtomProperties.html#acee5ab1334e878fa629101358b5a747e">setPosition()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a6ef5eed524f652885d997344084f9148">◆ </a></span>AtomProperties() <span class="overload">[2/5]</span></h2>
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<td class="memname">AtomProperties::AtomProperties </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> * </td>
<td class="paramname"><em>myPM</em>, </td>
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<td class="paramtype">physicalModel::AtomProperties </td>
<td class="paramname"><em>xmlAtomProp</em> </td>
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<p>constructor from xml node: try to read and get the properties from xml </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
<tr><td class="paramname">prop</td><td>the xsd node of properties for this atom. </td></tr>
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</dd>
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<p class="reference">References <a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate()</a>, <a class="el" href="classStructureProperties.html#a989758e97c3249b5e8f769b353e8aefe">StructureProperties::setIndex()</a>, <a class="el" href="classProperties.html#a630adc42d8a4bd88d2ae7f8f527bf83e">Properties::setName()</a>, <a class="el" href="classAtomProperties.html#acee5ab1334e878fa629101358b5a747e">setPosition()</a>, and <a class="el" href="classProperties.html#a6770198ffedb2a221f5b7d28bfc902a0">Properties::xmlToFields()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a652c9a72a8bcb80400724f26e9d304ff">◆ </a></span>AtomProperties() <span class="overload">[3/5]</span></h2>
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<td class="memname">AtomProperties::AtomProperties </td>
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<td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> * </td>
<td class="paramname"><em>myPM</em>, </td>
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<td class="paramtype">const unsigned int </td>
<td class="paramname"><em>ind</em> </td>
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<p>set the position to the origin </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
<tr><td class="paramname">ind</td><td>an unique index </td></tr>
</table>
</dd>
</dl>
<p class="reference">References <a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate()</a>, <a class="el" href="classStructureProperties.html#aede0af0788fcc531cca23ff730306b62">StructureProperties::index</a>, <a class="el" href="classAtomProperties.html#a2926922047406a8afab7b5590abf821d">maxUniqueIndex</a>, and <a class="el" href="classAtomProperties.html#acee5ab1334e878fa629101358b5a747e">setPosition()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#afe8e3b046921b72805550135fdd122a8">◆ </a></span>AtomProperties() <span class="overload">[4/5]</span></h2>
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<td class="memname">AtomProperties::AtomProperties </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> * </td>
<td class="paramname"><em>myPM</em>, </td>
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<td class="paramtype">const double </td>
<td class="paramname"><em>pos</em>[3] </td>
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<p>generate an unique index. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
<tr><td class="paramname">pos</td><td>the initial position </td></tr>
</table>
</dd>
</dl>
<p class="reference">References <a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate()</a>, <a class="el" href="classStructureProperties.html#aede0af0788fcc531cca23ff730306b62">StructureProperties::index</a>, <a class="el" href="classAtomProperties.html#a2926922047406a8afab7b5590abf821d">maxUniqueIndex</a>, and <a class="el" href="classAtomProperties.html#acee5ab1334e878fa629101358b5a747e">setPosition()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#aa7556def0df2aa64a0dc56f8e7bb2696">◆ </a></span>AtomProperties() <span class="overload">[5/5]</span></h2>
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<td class="memname">AtomProperties::AtomProperties </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> * </td>
<td class="paramname"><em>myPM</em>, </td>
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<td class="paramtype">const unsigned int </td>
<td class="paramname"><em>ind</em>, </td>
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<td class="paramtype">const double </td>
<td class="paramname"><em>pos</em>[3] </td>
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<p>everything is given here </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
<tr><td class="paramname">pos</td><td>the initial position </td></tr>
<tr><td class="paramname">ind</td><td>an unique index </td></tr>
</table>
</dd>
</dl>
<p class="reference">References <a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate()</a>, <a class="el" href="classStructureProperties.html#aede0af0788fcc531cca23ff730306b62">StructureProperties::index</a>, <a class="el" href="classAtomProperties.html#a2926922047406a8afab7b5590abf821d">maxUniqueIndex</a>, and <a class="el" href="classAtomProperties.html#acee5ab1334e878fa629101358b5a747e">setPosition()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a63ea2175c36a5c5370e7f3986063ef8b">◆ </a></span>~AtomProperties()</h2>
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<td class="memname">AtomProperties::~AtomProperties </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
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<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
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<p>the destructor... </p>
<p class="reference">References <a class="el" href="classAtomProperties.html#a3b6469ec7bb4210ce10d82a6a70babe7">allocated</a>, and <a class="el" href="classAtomProperties.html#a1d0dd72ca18de4ebca82c0f885bcb565">X</a>.</p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#ae073f7c23edb17dc7898cb59e91805e0">◆ </a></span>allocate()</h2>
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<td class="memname">void AtomProperties::allocate </td>
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<p>allocate the memory needed for the position (double[3]). </p>
<p>This place in memory is a default, it can be changed using setPositionPointer(..). This method is called in all the constructors, and only there. </p>
<p class="reference">References <a class="el" href="classAtomProperties.html#a3b6469ec7bb4210ce10d82a6a70babe7">allocated</a>, and <a class="el" href="classAtomProperties.html#a1d0dd72ca18de4ebca82c0f885bcb565">X</a>.</p>
<p class="reference">Referenced by <a class="el" href="classAtomProperties.html#a31a2cb2ce34e0ba3f3d97327c0b5e52a">AtomProperties()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a75ed95408ef175ec75249421391eda9d">◆ </a></span>getPosition()</h2>
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<td class="memname">void AtomProperties::getPosition </td>
<td>(</td>
<td class="paramtype">double </td>
<td class="paramname"><em>pos</em>[3]</td><td>)</td>
<td> const</td>
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<p>get the position of the atom (array of 3 doubles) </p>
<p class="reference">Referenced by <a class="el" href="classAtomProperties.html#a5ca07fe5bf2264de30f1da65bfee1140">setPositionPointer()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a11abf58717a30ff6824be4d7359abc1b">◆ </a></span>resetUniqueIndex()</h2>
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<td class="memname">void AtomProperties::resetUniqueIndex </td>
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<p>Reinitialize the unique index to zero (usually that what you want to do when you start to load a new <a class="el" href="classPhysicalModel.html" title="This is the main class of this project. ">PhysicalModel</a>. </p>
<p class="reference">References <a class="el" href="classAtomProperties.html#a2926922047406a8afab7b5590abf821d">maxUniqueIndex</a>.</p>
<p class="reference">Referenced by <a class="el" href="classPhysicalModel.html#ae53fe9d0d9a389d3be482c48c9352331">PhysicalModel::clear()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#acee5ab1334e878fa629101358b5a747e">◆ </a></span>setPosition() <span class="overload">[1/2]</span></h2>
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<td class="memname">void AtomProperties::setPosition </td>
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<td class="paramtype">const double </td>
<td class="paramname"><em>pos</em>[3]</td><td>)</td>
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<p>set the position of the atom </p>
<p class="reference">Referenced by <a class="el" href="classAtomProperties.html#a31a2cb2ce34e0ba3f3d97327c0b5e52a">AtomProperties()</a>, and <a class="el" href="classAtomProperties.html#a5ca07fe5bf2264de30f1da65bfee1140">setPositionPointer()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#aabcac33e880ca5c34c1b752fddfc6049">◆ </a></span>setPosition() <span class="overload">[2/2]</span></h2>
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<td class="memname">void AtomProperties::setPosition </td>
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<td class="paramtype">const double </td>
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<td class="paramtype">const double </td>
<td class="paramname"><em>y</em>, </td>
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<td class="paramtype">const double </td>
<td class="paramname"><em>z</em> </td>
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<p>set the position of the atom </p>
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<h2 class="memtitle"><span class="permalink"><a href="#a5ca07fe5bf2264de30f1da65bfee1140">◆ </a></span>setPositionPointer()</h2>
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<td class="memname">void AtomProperties::setPositionPointer </td>
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<td class="paramtype">double * </td>
<td class="paramname"><em>ptr</em>, </td>
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<td class="paramtype">bool </td>
<td class="paramname"><em>update</em> = <code>true</code> </td>
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<p>change the position pointer. </p>
<p>This is useful to allocate a big bunch of memory with all the position in order to improve memory cache usage. </p><dl class="section note"><dt>Note</dt><dd>this memory is not deleted/cleaned in ~AtomProperties (the destructor)</dd></dl>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">ptr</td><td>the pointer to the memory (should have enough space for storing double[3] </td></tr>
<tr><td class="paramname">update</td><td>update the new memory space using the previously stored position </td></tr>
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<p class="reference">References <a class="el" href="classAtomProperties.html#a3b6469ec7bb4210ce10d82a6a70babe7">allocated</a>, <a class="el" href="classAtomProperties.html#a75ed95408ef175ec75249421391eda9d">getPosition()</a>, <a class="el" href="classAtomProperties.html#acee5ab1334e878fa629101358b5a747e">setPosition()</a>, and <a class="el" href="classAtomProperties.html#a1d0dd72ca18de4ebca82c0f885bcb565">X</a>.</p>
<p class="reference">Referenced by <a class="el" href="classPhysicalModel.html#a390622b07737de73554bdb0660e6b0d9">PhysicalModel::parseTree()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#af84ae75eaeaad5729d5875671c6f6120">◆ </a></span>xmlPrint()</h2>
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<td class="memname">void AtomProperties::xmlPrint </td>
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<p>print to an output stream in "pseudo" XML format. </p>
<p class="reference">References <a class="el" href="classProperties.html#a9db1af2b4dd5aa97e4941e533592ceb8">Properties::fields</a>, <a class="el" href="classProperties.html#a20a68139af83de00e989198387927200">Properties::getName()</a>, <a class="el" href="classStructureProperties.html#aede0af0788fcc531cca23ff730306b62">StructureProperties::index</a>, and <a class="el" href="classAtomProperties.html#a1d0dd72ca18de4ebca82c0f885bcb565">X</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a3b6469ec7bb4210ce10d82a6a70babe7">◆ </a></span>allocated</h2>
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<td class="memname">bool AtomProperties::allocated</td>
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<p>true only if the memory used for the position was allocated in the constructor and not changed afterwards </p>
<p class="reference">Referenced by <a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate()</a>, <a class="el" href="classAtomProperties.html#a5ca07fe5bf2264de30f1da65bfee1140">setPositionPointer()</a>, and <a class="el" href="classAtomProperties.html#a63ea2175c36a5c5370e7f3986063ef8b">~AtomProperties()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a2926922047406a8afab7b5590abf821d">◆ </a></span>maxUniqueIndex</h2>
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<td class="memname">unsigned int AtomProperties::maxUniqueIndex = 0</td>
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<p>unique number (used to generate unique index for atoms if not given at the instanciation) </p>
<p class="reference">Referenced by <a class="el" href="classAtomProperties.html#a31a2cb2ce34e0ba3f3d97327c0b5e52a">AtomProperties()</a>, and <a class="el" href="classAtomProperties.html#a11abf58717a30ff6824be4d7359abc1b">resetUniqueIndex()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a1d0dd72ca18de4ebca82c0f885bcb565">◆ </a></span>X</h2>
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<td class="memname">double* AtomProperties::X</td>
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<p>Pointer to the memory triplet that stores the atom's position. </p>
<p class="reference">Referenced by <a class="el" href="classAtomProperties.html#ae073f7c23edb17dc7898cb59e91805e0">allocate()</a>, <a class="el" href="classAtomProperties.html#a5ca07fe5bf2264de30f1da65bfee1140">setPositionPointer()</a>, <a class="el" href="classAtomProperties.html#af84ae75eaeaad5729d5875671c6f6120">xmlPrint()</a>, and <a class="el" href="classAtomProperties.html#a63ea2175c36a5c5370e7f3986063ef8b">~AtomProperties()</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
<li><a class="el" href="AtomProperties_8h_source.html">AtomProperties.h</a></li>
<li><a class="el" href="AtomProperties_8cpp.html">AtomProperties.cpp</a></li>
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