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<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pri-attribs">Private Attributes</a> &#124;
<a href="classCell-members.html">List of all members</a>  </div>
  <div class="headertitle">
<div class="title">Cell Class Reference<div class="ingroups"><a class="el" href="group__group__cepmodeling.html">CEP Modeling</a> &raquo; <a class="el" href="group__group__cepmodeling__libraries.html">Libraries</a> &raquo; <a class="el" href="group__group__cepmodeling__libraries__pml.html">PML</a></div></div>  </div>
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<p>A cell has an unique index in the physical model object, is composed by atoms, and different basic properties.  
 <a href="classCell.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="Cell_8h_source.html">Cell.h</a>&gt;</code></p>

<p>Inherits <a class="el" href="classStructure.html">Structure</a>, and <a class="el" href="classStructuralComponent.html">StructuralComponent</a>.</p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a60b6ec6eab9c9156bb06302895425e78"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a60b6ec6eab9c9156bb06302895425e78">addStructuralComponent</a> (<a class="el" href="classStructuralComponent.html">StructuralComponent</a> *)</td></tr>
<tr class="memdesc:a60b6ec6eab9c9156bb06302895425e78"><td class="mdescLeft">&#160;</td><td class="mdescRight">add a particular <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> in the list (and set parentSC if null)  <a href="#a60b6ec6eab9c9156bb06302895425e78">More...</a><br /></td></tr>
<tr class="separator:a60b6ec6eab9c9156bb06302895425e78"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a403ded9e8afd04ec491decc6273417c2"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a403ded9e8afd04ec491decc6273417c2">Cell</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *myPM, const <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">StructureProperties::GeometricType</a> t)</td></tr>
<tr class="memdesc:a403ded9e8afd04ec491decc6273417c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">constructor that generates a unique index  <a href="#a403ded9e8afd04ec491decc6273417c2">More...</a><br /></td></tr>
<tr class="separator:a403ded9e8afd04ec491decc6273417c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a36fa459409a8b8dbd6ad1994aea484d3"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a36fa459409a8b8dbd6ad1994aea484d3">Cell</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *myPM, physicalModel::Cell xmlCell, <a class="el" href="classStructuralComponent.html">StructuralComponent</a> *sc)</td></tr>
<tr class="memdesc:a36fa459409a8b8dbd6ad1994aea484d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">constructor from xml node: try to read and get the parameters from xml  <a href="#a36fa459409a8b8dbd6ad1994aea484d3">More...</a><br /></td></tr>
<tr class="separator:a36fa459409a8b8dbd6ad1994aea484d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7c1453ccecf89d2125f54dd2c94e1145"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a7c1453ccecf89d2125f54dd2c94e1145">Cell</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *myPM, const <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">StructureProperties::GeometricType</a> t, const unsigned int ind)</td></tr>
<tr class="memdesc:a7c1453ccecf89d2125f54dd2c94e1145"><td class="mdescLeft">&#160;</td><td class="mdescRight">When you know the index of the cell, use this constructor.  <a href="#a7c1453ccecf89d2125f54dd2c94e1145">More...</a><br /></td></tr>
<tr class="separator:a7c1453ccecf89d2125f54dd2c94e1145"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4904ddd31ac8e999e79b9e75e7441d0d"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4f">StructuralComponent::ComposedBy</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a4904ddd31ac8e999e79b9e75e7441d0d">composedBy</a> ()</td></tr>
<tr class="memdesc:a4904ddd31ac8e999e79b9e75e7441d0d"><td class="mdescLeft">&#160;</td><td class="mdescRight">overloaded from Structural component, always return <a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4fa5e6ad6318723fbd0835e923da6a55e2d" title="the structural component is made of atoms ">StructuralComponent::ATOMS</a>  <a href="#a4904ddd31ac8e999e79b9e75e7441d0d">More...</a><br /></td></tr>
<tr class="separator:a4904ddd31ac8e999e79b9e75e7441d0d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7348a664e5fbb2167b12015b2af2b414"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a7348a664e5fbb2167b12015b2af2b414">deleteAllStructures</a> ()</td></tr>
<tr class="memdesc:a7348a664e5fbb2167b12015b2af2b414"><td class="mdescLeft">&#160;</td><td class="mdescRight">This method overload the one defined in <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a>.  <a href="#a7348a664e5fbb2167b12015b2af2b414">More...</a><br /></td></tr>
<tr class="separator:a7348a664e5fbb2167b12015b2af2b414"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aada2c3ed99a94c8523ea7cfb8865b296"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#aada2c3ed99a94c8523ea7cfb8865b296">getParentSC</a> ()</td></tr>
<tr class="memdesc:aada2c3ed99a94c8523ea7cfb8865b296"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the direct parent structural that own this cell.  <a href="#aada2c3ed99a94c8523ea7cfb8865b296">More...</a><br /></td></tr>
<tr class="separator:aada2c3ed99a94c8523ea7cfb8865b296"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa15ae2bf870c36166041d8d840d34957"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCellProperties.html">CellProperties</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#aa15ae2bf870c36166041d8d840d34957">getProperties</a> ()</td></tr>
<tr class="memdesc:aa15ae2bf870c36166041d8d840d34957"><td class="mdescLeft">&#160;</td><td class="mdescRight">return the property  <a href="#aa15ae2bf870c36166041d8d840d34957">More...</a><br /></td></tr>
<tr class="separator:aa15ae2bf870c36166041d8d840d34957"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5d0efbbf7007880c16cfc783ff9f7cbd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a5d0efbbf7007880c16cfc783ff9f7cbd">getQuadFaces</a> ()</td></tr>
<tr class="memdesc:a5d0efbbf7007880c16cfc783ff9f7cbd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return a new structural component directly representing the <a class="el" href="classCell.html" title="A cell has an unique index in the physical model object, is composed by atoms, and different basic pr...">Cell</a> as a list of quad faces (when possible)  <a href="#a5d0efbbf7007880c16cfc783ff9f7cbd">More...</a><br /></td></tr>
<tr class="separator:a5d0efbbf7007880c16cfc783ff9f7cbd"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa0af895373cd4d81fdaa1a1306d8b084"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#aa0af895373cd4d81fdaa1a1306d8b084">getTriangleFaces</a> ()</td></tr>
<tr class="memdesc:aa0af895373cd4d81fdaa1a1306d8b084"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return a new structural component directly representing the <a class="el" href="classCell.html" title="A cell has an unique index in the physical model object, is composed by atoms, and different basic pr...">Cell</a> as a list of triangular faces (when possible)  <a href="#aa0af895373cd4d81fdaa1a1306d8b084">More...</a><br /></td></tr>
<tr class="separator:aa0af895373cd4d81fdaa1a1306d8b084"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afdb196f45963f5a29870371d7134681e"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#afdb196f45963f5a29870371d7134681e">isInstanceOf</a> (const char *) const</td></tr>
<tr class="memdesc:afdb196f45963f5a29870371d7134681e"><td class="mdescLeft">&#160;</td><td class="mdescRight">return true only if the parameter is equal to "MultiComponent"  <a href="#afdb196f45963f5a29870371d7134681e">More...</a><br /></td></tr>
<tr class="separator:afdb196f45963f5a29870371d7134681e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa5f738ea0114bc44c38968ff15380529"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#aa5f738ea0114bc44c38968ff15380529">makePrintData</a> (const <a class="el" href="classStructuralComponent.html">StructuralComponent</a> *)</td></tr>
<tr class="memdesc:aa5f738ea0114bc44c38968ff15380529"><td class="mdescLeft">&#160;</td><td class="mdescRight">is this sc the one that will be the one that will make the cell to print out all its data or is this a sc that will just print out the cell ref?  <a href="#aa5f738ea0114bc44c38968ff15380529">More...</a><br /></td></tr>
<tr class="separator:aa5f738ea0114bc44c38968ff15380529"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab5f4ba86ac684c857b3aa5aa8209d216"><td class="memItemLeft" align="right" valign="top">double *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#ab5f4ba86ac684c857b3aa5aa8209d216">normal</a> ()</td></tr>
<tr class="memdesc:ab5f4ba86ac684c857b3aa5aa8209d216"><td class="mdescLeft">&#160;</td><td class="mdescRight">compute the normal of the facet Warning : Only available for QUAD and TRIANGLE type cells  <a href="#ab5f4ba86ac684c857b3aa5aa8209d216">More...</a><br /></td></tr>
<tr class="separator:ab5f4ba86ac684c857b3aa5aa8209d216"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a60416d21bf0b6d89e016a1ceebdc31b7"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a60416d21bf0b6d89e016a1ceebdc31b7">setIndex</a> (const unsigned int)</td></tr>
<tr class="memdesc:a60416d21bf0b6d89e016a1ceebdc31b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the index.  <a href="#a60416d21bf0b6d89e016a1ceebdc31b7">More...</a><br /></td></tr>
<tr class="separator:a60416d21bf0b6d89e016a1ceebdc31b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a3ec2b6964350dff3d30f8ff6692eeb1c"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a3ec2b6964350dff3d30f8ff6692eeb1c">signedVolumeTriangle</a> (double p1[3], double p2[3], double p3[3])</td></tr>
<tr class="memdesc:a3ec2b6964350dff3d30f8ff6692eeb1c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the volume of a triangle with the origin of the coordinate system.  <a href="#a3ec2b6964350dff3d30f8ff6692eeb1c">More...</a><br /></td></tr>
<tr class="separator:a3ec2b6964350dff3d30f8ff6692eeb1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4e63181e04a854e214055338e695b5a4"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a4e63181e04a854e214055338e695b5a4">surface</a> ()</td></tr>
<tr class="memdesc:a4e63181e04a854e214055338e695b5a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the surface of the cell.  <a href="#a4e63181e04a854e214055338e695b5a4">More...</a><br /></td></tr>
<tr class="separator:a4e63181e04a854e214055338e695b5a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abc30c950b76c1c17ffc173e06bf3ee59"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#abc30c950b76c1c17ffc173e06bf3ee59">volume</a> ()</td></tr>
<tr class="memdesc:abc30c950b76c1c17ffc173e06bf3ee59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute the volume of the cell.  <a href="#abc30c950b76c1c17ffc173e06bf3ee59">More...</a><br /></td></tr>
<tr class="separator:abc30c950b76c1c17ffc173e06bf3ee59"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a27d9e9f3241501604f8ede88d72ce9ba"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a27d9e9f3241501604f8ede88d72ce9ba">xmlPrint</a> (std::ostream &amp;, const <a class="el" href="classStructuralComponent.html">StructuralComponent</a> *)</td></tr>
<tr class="memdesc:a27d9e9f3241501604f8ede88d72ce9ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">print to an output stream in "pseudo" XML format.  <a href="#a27d9e9f3241501604f8ede88d72ce9ba">More...</a><br /></td></tr>
<tr class="separator:a27d9e9f3241501604f8ede88d72ce9ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9fa559f7a28e2b4336c6879ca09304d8"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a9fa559f7a28e2b4336c6879ca09304d8">~Cell</a> ()</td></tr>
<tr class="memdesc:a9fa559f7a28e2b4336c6879ca09304d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">the destructor, my tailor. BECAREFUL: the atoms should not not be deleted here...  <a href="#a9fa559f7a28e2b4336c6879ca09304d8">More...</a><br /></td></tr>
<tr class="separator:a9fa559f7a28e2b4336c6879ca09304d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classStructure"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classStructure')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classStructure.html">Structure</a></td></tr>
<tr class="memitem:a9a21135d09e8292affb68647dee9d1a7 inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classStructuralComponent.html">StructuralComponent</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a9a21135d09e8292affb68647dee9d1a7">getAllStructuralComponents</a> ()</td></tr>
<tr class="memdesc:a9a21135d09e8292affb68647dee9d1a7 inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the list of all the <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> that are using this structure  <a href="classStructure.html#a9a21135d09e8292affb68647dee9d1a7">More...</a><br /></td></tr>
<tr class="separator:a9a21135d09e8292affb68647dee9d1a7 inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a04b2fc52d7cc2af4356620f1d7e09c18 inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">unsigned int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a04b2fc52d7cc2af4356620f1d7e09c18">getIndex</a> () const</td></tr>
<tr class="memdesc:a04b2fc52d7cc2af4356620f1d7e09c18 inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the structure unique index (stored in its property)  <a href="classStructure.html#a04b2fc52d7cc2af4356620f1d7e09c18">More...</a><br /></td></tr>
<tr class="separator:a04b2fc52d7cc2af4356620f1d7e09c18 inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a169a753f6b51f193cb5d62294b4b02be inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a169a753f6b51f193cb5d62294b4b02be">getName</a> () const</td></tr>
<tr class="memdesc:a169a753f6b51f193cb5d62294b4b02be inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the name of the structure  <a href="classStructure.html#a169a753f6b51f193cb5d62294b4b02be">More...</a><br /></td></tr>
<tr class="separator:a169a753f6b51f193cb5d62294b4b02be inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a58d9d946f94837c5a2141d3c7f250adf inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">unsigned int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a58d9d946f94837c5a2141d3c7f250adf">getNumberOfStructuralComponents</a> () const</td></tr>
<tr class="memdesc:a58d9d946f94837c5a2141d3c7f250adf inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the number of <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> that are using this structure  <a href="classStructure.html#a58d9d946f94837c5a2141d3c7f250adf">More...</a><br /></td></tr>
<tr class="separator:a58d9d946f94837c5a2141d3c7f250adf inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae259369164469377b42ba25912439338 inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#ae259369164469377b42ba25912439338">getStructuralComponent</a> (unsigned int i)</td></tr>
<tr class="memdesc:ae259369164469377b42ba25912439338 inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">get a particular <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> that is using this structure  <a href="classStructure.html#ae259369164469377b42ba25912439338">More...</a><br /></td></tr>
<tr class="separator:ae259369164469377b42ba25912439338 inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8fd619e1b2635bd473bf182d0528f9c7 inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">StructureProperties::GeometricType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a8fd619e1b2635bd473bf182d0528f9c7">getType</a> () const</td></tr>
<tr class="memdesc:a8fd619e1b2635bd473bf182d0528f9c7 inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the type of index  <a href="classStructure.html#a8fd619e1b2635bd473bf182d0528f9c7">More...</a><br /></td></tr>
<tr class="separator:a8fd619e1b2635bd473bf182d0528f9c7 inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0eb7c50fc8aff59e51ec6c895a79601b inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a0eb7c50fc8aff59e51ec6c895a79601b">removeStructuralComponent</a> (<a class="el" href="classStructuralComponent.html">StructuralComponent</a> *)</td></tr>
<tr class="memdesc:a0eb7c50fc8aff59e51ec6c895a79601b inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">remove a particular <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> from the list  <a href="classStructure.html#a0eb7c50fc8aff59e51ec6c895a79601b">More...</a><br /></td></tr>
<tr class="separator:a0eb7c50fc8aff59e51ec6c895a79601b inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aca4dbb99fb713e922fbb33397343ccb0 inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#aca4dbb99fb713e922fbb33397343ccb0">setName</a> (std::string)</td></tr>
<tr class="memdesc:aca4dbb99fb713e922fbb33397343ccb0 inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the name of the structure  <a href="classStructure.html#aca4dbb99fb713e922fbb33397343ccb0">More...</a><br /></td></tr>
<tr class="separator:aca4dbb99fb713e922fbb33397343ccb0 inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa53e0a158a491c782c858436896b9c02 inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#aa53e0a158a491c782c858436896b9c02">setPhysicalModel</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *)</td></tr>
<tr class="memdesc:aa53e0a158a491c782c858436896b9c02 inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the physical model  <a href="classStructure.html#aa53e0a158a491c782c858436896b9c02">More...</a><br /></td></tr>
<tr class="separator:aa53e0a158a491c782c858436896b9c02 inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac6c101b28efea5a150cce3bb8948f8d1 inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#ac6c101b28efea5a150cce3bb8948f8d1">Structure</a> ()</td></tr>
<tr class="memdesc:ac6c101b28efea5a150cce3bb8948f8d1 inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base constructor.  <a href="classStructure.html#ac6c101b28efea5a150cce3bb8948f8d1">More...</a><br /></td></tr>
<tr class="separator:ac6c101b28efea5a150cce3bb8948f8d1 inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9b0688285fa394f7b93b1b4edd6a5fbf inherit pub_methods_classStructure"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a9b0688285fa394f7b93b1b4edd6a5fbf">~Structure</a> ()</td></tr>
<tr class="memdesc:a9b0688285fa394f7b93b1b4edd6a5fbf inherit pub_methods_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor needed here as this is an abstract class (pure virtual)  <a href="classStructure.html#a9b0688285fa394f7b93b1b4edd6a5fbf">More...</a><br /></td></tr>
<tr class="separator:a9b0688285fa394f7b93b1b4edd6a5fbf inherit pub_methods_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classStructuralComponent"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classStructuralComponent')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classStructuralComponent.html">StructuralComponent</a></td></tr>
<tr class="memitem:ac885c7b03b4710985c26fbb8fdbdd958 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#ac885c7b03b4710985c26fbb8fdbdd958">addStructure</a> (<a class="el" href="classStructure.html">Structure</a> *s, bool check=true)</td></tr>
<tr class="memdesc:ac885c7b03b4710985c26fbb8fdbdd958 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Add a <a class="el" href="classStructure.html" title="Pure virtual class that represent an element of the structure. ">Structure</a> in the list (and tells the structure to add this structural component in its list).  <a href="classStructuralComponent.html#ac885c7b03b4710985c26fbb8fdbdd958">More...</a><br /></td></tr>
<tr class="separator:ac885c7b03b4710985c26fbb8fdbdd958 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5106d43bc6e9e1cf0647f731412e88dd inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a5106d43bc6e9e1cf0647f731412e88dd">addStructureIfNotIn</a> (<a class="el" href="classStructure.html">Structure</a> *s)</td></tr>
<tr class="memdesc:a5106d43bc6e9e1cf0647f731412e88dd inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Add a <a class="el" href="classStructure.html" title="Pure virtual class that represent an element of the structure. ">Structure</a> in the list, only if it is not already in (and in this case tells the structure to add this structural component to its list).  <a href="classStructuralComponent.html#a5106d43bc6e9e1cf0647f731412e88dd">More...</a><br /></td></tr>
<tr class="separator:a5106d43bc6e9e1cf0647f731412e88dd inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab3ceb64c9c5569691b61af8ef45485bd inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#ab3ceb64c9c5569691b61af8ef45485bd">getAtoms</a> ()</td></tr>
<tr class="memdesc:ab3ceb64c9c5569691b61af8ef45485bd inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return a <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> with all the atoms of this structural component.  <a href="classStructuralComponent.html#ab3ceb64c9c5569691b61af8ef45485bd">More...</a><br /></td></tr>
<tr class="separator:ab3ceb64c9c5569691b61af8ef45485bd inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a943e4c8380ec9de619b41d469520ac43 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCell.html">Cell</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a943e4c8380ec9de619b41d469520ac43">getCell</a> (unsigned int) const</td></tr>
<tr class="memdesc:a943e4c8380ec9de619b41d469520ac43 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get cell by order number (not cell index)  <a href="classStructuralComponent.html#a943e4c8380ec9de619b41d469520ac43">More...</a><br /></td></tr>
<tr class="separator:a943e4c8380ec9de619b41d469520ac43 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a74ca00a92295f32d5e5fcf0a7f96cd0f inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">double *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a74ca00a92295f32d5e5fcf0a7f96cd0f">getColor</a> () const</td></tr>
<tr class="memdesc:a74ca00a92295f32d5e5fcf0a7f96cd0f inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the color.  <a href="classStructuralComponent.html#a74ca00a92295f32d5e5fcf0a7f96cd0f">More...</a><br /></td></tr>
<tr class="separator:a74ca00a92295f32d5e5fcf0a7f96cd0f inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad053508af1faf584187eeb6e0ef0918a inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#ad053508af1faf584187eeb6e0ef0918a">getColor</a> (double *r, double *g, double *b, double *a) const</td></tr>
<tr class="memdesc:ad053508af1faf584187eeb6e0ef0918a inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the color by its 4 componants r,g,b and a.  <a href="classStructuralComponent.html#ad053508af1faf584187eeb6e0ef0918a">More...</a><br /></td></tr>
<tr class="separator:ad053508af1faf584187eeb6e0ef0918a inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5a5cfa3c78cec47c7280be3da5a21632 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classRenderingMode.html#a563f278cfab4af51a7c5d7ffa42f81cb">RenderingMode::Mode</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a5a5cfa3c78cec47c7280be3da5a21632">getMode</a> () const</td></tr>
<tr class="memdesc:a5a5cfa3c78cec47c7280be3da5a21632 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the rendering mode  <a href="classStructuralComponent.html#a5a5cfa3c78cec47c7280be3da5a21632">More...</a><br /></td></tr>
<tr class="separator:a5a5cfa3c78cec47c7280be3da5a21632 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af9d42904cb5d1875c63625bd502d5f96 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">unsigned int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#af9d42904cb5d1875c63625bd502d5f96">getNumberOfCells</a> () const</td></tr>
<tr class="memdesc:af9d42904cb5d1875c63625bd502d5f96 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the total nr of cell of the component  <a href="classStructuralComponent.html#af9d42904cb5d1875c63625bd502d5f96">More...</a><br /></td></tr>
<tr class="separator:af9d42904cb5d1875c63625bd502d5f96 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a494306f66d840ba856b647353f16e9c8 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">unsigned int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a494306f66d840ba856b647353f16e9c8">getNumberOfStructures</a> () const</td></tr>
<tr class="memdesc:a494306f66d840ba856b647353f16e9c8 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the number of structures  <a href="classStructuralComponent.html#a494306f66d840ba856b647353f16e9c8">More...</a><br /></td></tr>
<tr class="separator:a494306f66d840ba856b647353f16e9c8 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a26b1f51d7cb2f8ee1572defb38062982 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponentProperties.html">StructuralComponentProperties</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a26b1f51d7cb2f8ee1572defb38062982">getProperties</a> ()</td></tr>
<tr class="memdesc:a26b1f51d7cb2f8ee1572defb38062982 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the structural component properties of this SC  <a href="classStructuralComponent.html#a26b1f51d7cb2f8ee1572defb38062982">More...</a><br /></td></tr>
<tr class="separator:a26b1f51d7cb2f8ee1572defb38062982 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a61d5fe0dac85f49bd1d6ccda12a84c19 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponentProperties.html#a2dbd9d325c84abdaf5bbc5318eeefbef">StructuralComponentProperties::Color</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a61d5fe0dac85f49bd1d6ccda12a84c19">getStructuralComponentPropertiesColor</a> () const</td></tr>
<tr class="memdesc:a61d5fe0dac85f49bd1d6ccda12a84c19 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return the color as a code (see <a class="el" href="classStructuralComponentProperties.html#a2dbd9d325c84abdaf5bbc5318eeefbef" title="Default color settings. ">StructuralComponentProperties::Color</a> enum)  <a href="classStructuralComponent.html#a61d5fe0dac85f49bd1d6ccda12a84c19">More...</a><br /></td></tr>
<tr class="separator:a61d5fe0dac85f49bd1d6ccda12a84c19 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2bfab6723909acea409f6a09b25a6676 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructure.html">Structure</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a2bfab6723909acea409f6a09b25a6676">getStructure</a> (const unsigned int) const</td></tr>
<tr class="memdesc:a2bfab6723909acea409f6a09b25a6676 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get a structure by its index (fisrt structure is at index 0)  <a href="classStructuralComponent.html#a2bfab6723909acea409f6a09b25a6676">More...</a><br /></td></tr>
<tr class="separator:a2bfab6723909acea409f6a09b25a6676 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a973cd114c4d45f4594a0c7df08878805 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructure.html">Structure</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a973cd114c4d45f4594a0c7df08878805">getStructureByIndex</a> (const unsigned int)</td></tr>
<tr class="memdesc:a973cd114c4d45f4594a0c7df08878805 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get a structure by its unique index  <a href="classStructuralComponent.html#a973cd114c4d45f4594a0c7df08878805">More...</a><br /></td></tr>
<tr class="separator:a973cd114c4d45f4594a0c7df08878805 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af34e32197f2c71ddbf4a91833dc79a7a inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructure.html">Structure</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#af34e32197f2c71ddbf4a91833dc79a7a">getStructureByName</a> (const std::string)</td></tr>
<tr class="memdesc:af34e32197f2c71ddbf4a91833dc79a7a inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get a structure by its name  <a href="classStructuralComponent.html#af34e32197f2c71ddbf4a91833dc79a7a">More...</a><br /></td></tr>
<tr class="separator:af34e32197f2c71ddbf4a91833dc79a7a inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4b415a02e6ecb0449d09fcdd1a441f78 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a4b415a02e6ecb0449d09fcdd1a441f78">isCompatible</a> (<a class="el" href="classStructure.html">Structure</a> *)</td></tr>
<tr class="memdesc:a4b415a02e6ecb0449d09fcdd1a441f78 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">return true if the given structure is compatible with what composes this structural component.  <a href="classStructuralComponent.html#a4b415a02e6ecb0449d09fcdd1a441f78">More...</a><br /></td></tr>
<tr class="separator:a4b415a02e6ecb0449d09fcdd1a441f78 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a34e221db3bf4407aafa1b0de26655e8e inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a34e221db3bf4407aafa1b0de26655e8e">isStructureIn</a> (<a class="el" href="classStructure.html">Structure</a> *s)</td></tr>
<tr class="memdesc:a34e221db3bf4407aafa1b0de26655e8e inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a given structure is present in the list.  <a href="classStructuralComponent.html#a34e221db3bf4407aafa1b0de26655e8e">More...</a><br /></td></tr>
<tr class="separator:a34e221db3bf4407aafa1b0de26655e8e inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a30000663df890109f54bf013c7e338af inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a30000663df890109f54bf013c7e338af">isVisible</a> (const <a class="el" href="classRenderingMode.html#a563f278cfab4af51a7c5d7ffa42f81cb">RenderingMode::Mode</a> mode) const</td></tr>
<tr class="memdesc:a30000663df890109f54bf013c7e338af inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">tell if a specific rendering mode is visible or not  <a href="classStructuralComponent.html#a30000663df890109f54bf013c7e338af">More...</a><br /></td></tr>
<tr class="separator:a30000663df890109f54bf013c7e338af inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a57f051a5ab620854a3ad6fe85fb6305d inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a57f051a5ab620854a3ad6fe85fb6305d">plannedNumberOfStructures</a> (const unsigned int)</td></tr>
<tr class="memdesc:a57f051a5ab620854a3ad6fe85fb6305d inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">optimize the I/O of the std:vector structures.  <a href="classStructuralComponent.html#a57f051a5ab620854a3ad6fe85fb6305d">More...</a><br /></td></tr>
<tr class="separator:a57f051a5ab620854a3ad6fe85fb6305d inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac7ef47ff4e6f43037473c868b82f6a35 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#ac7ef47ff4e6f43037473c868b82f6a35">removeStructure</a> (<a class="el" href="classStructure.html">Structure</a> *s)</td></tr>
<tr class="memdesc:ac7ef47ff4e6f43037473c868b82f6a35 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Remove a structure from the list (and tells the structure to remove this structural component from its list).  <a href="classStructuralComponent.html#ac7ef47ff4e6f43037473c868b82f6a35">More...</a><br /></td></tr>
<tr class="separator:ac7ef47ff4e6f43037473c868b82f6a35 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2fbcf4b58643d0f45a5e9f5483172ec0 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a2fbcf4b58643d0f45a5e9f5483172ec0">setColor</a> (const <a class="el" href="classStructuralComponentProperties.html#a2dbd9d325c84abdaf5bbc5318eeefbef">StructuralComponentProperties::Color</a> c)</td></tr>
<tr class="memdesc:a2fbcf4b58643d0f45a5e9f5483172ec0 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the new color (using a <a class="el" href="classStructuralComponentProperties.html#a2dbd9d325c84abdaf5bbc5318eeefbef" title="Default color settings. ">StructuralComponentProperties::Color</a> enum)  <a href="classStructuralComponent.html#a2fbcf4b58643d0f45a5e9f5483172ec0">More...</a><br /></td></tr>
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<tr class="memitem:a295603ccb8e0a178d256bcae267623dd inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a295603ccb8e0a178d256bcae267623dd">setColor</a> (const double r, const double b, const double g, const double a)</td></tr>
<tr class="memdesc:a295603ccb8e0a178d256bcae267623dd inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the new RGBA color.  <a href="classStructuralComponent.html#a295603ccb8e0a178d256bcae267623dd">More...</a><br /></td></tr>
<tr class="separator:a295603ccb8e0a178d256bcae267623dd inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab38a262d9ec7268849f660211e2cda25 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#ab38a262d9ec7268849f660211e2cda25">setColor</a> (const double r, const double b, const double g)</td></tr>
<tr class="memdesc:ab38a262d9ec7268849f660211e2cda25 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the new RGB color.  <a href="classStructuralComponent.html#ab38a262d9ec7268849f660211e2cda25">More...</a><br /></td></tr>
<tr class="separator:ab38a262d9ec7268849f660211e2cda25 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a32c6762b05c96f4084e47dabb250aa50 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a32c6762b05c96f4084e47dabb250aa50">setMode</a> (const <a class="el" href="classRenderingMode.html#a563f278cfab4af51a7c5d7ffa42f81cb">RenderingMode::Mode</a>)</td></tr>
<tr class="memdesc:a32c6762b05c96f4084e47dabb250aa50 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the rendering mode  <a href="classStructuralComponent.html#a32c6762b05c96f4084e47dabb250aa50">More...</a><br /></td></tr>
<tr class="separator:a32c6762b05c96f4084e47dabb250aa50 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac27a77814c619066742006c694cb8db0 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#ac27a77814c619066742006c694cb8db0">setPhysicalModel</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *)</td></tr>
<tr class="memdesc:ac27a77814c619066742006c694cb8db0 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the physical model (recursively to all cells or to all atoms)  <a href="classStructuralComponent.html#ac27a77814c619066742006c694cb8db0">More...</a><br /></td></tr>
<tr class="separator:ac27a77814c619066742006c694cb8db0 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa95fe5f353dd71a103f2566212bb07d0 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#aa95fe5f353dd71a103f2566212bb07d0">setVisible</a> (const <a class="el" href="classRenderingMode.html#a563f278cfab4af51a7c5d7ffa42f81cb">RenderingMode::Mode</a> mode, const bool b)</td></tr>
<tr class="memdesc:aa95fe5f353dd71a103f2566212bb07d0 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the visibility of a specific rendering mode  <a href="classStructuralComponent.html#aa95fe5f353dd71a103f2566212bb07d0">More...</a><br /></td></tr>
<tr class="separator:aa95fe5f353dd71a103f2566212bb07d0 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a353f98e69702f212c9b7683757aeca59 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a353f98e69702f212c9b7683757aeca59">StructuralComponent</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *)</td></tr>
<tr class="memdesc:a353f98e69702f212c9b7683757aeca59 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default Constructor.  <a href="classStructuralComponent.html#a353f98e69702f212c9b7683757aeca59">More...</a><br /></td></tr>
<tr class="separator:a353f98e69702f212c9b7683757aeca59 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af705bac5f9badc5c0392d2c6d4c3917e inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#af705bac5f9badc5c0392d2c6d4c3917e">StructuralComponent</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *p, physicalModel::StructuralComponent xmlSC)</td></tr>
<tr class="memdesc:af705bac5f9badc5c0392d2c6d4c3917e inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">constructor from xml node: try to read and get the parmaters from xml  <a href="classStructuralComponent.html#af705bac5f9badc5c0392d2c6d4c3917e">More...</a><br /></td></tr>
<tr class="separator:af705bac5f9badc5c0392d2c6d4c3917e inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a84584becc23ae599457a740cca04c402 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a84584becc23ae599457a740cca04c402">StructuralComponent</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *, std::string)</td></tr>
<tr class="memdesc:a84584becc23ae599457a740cca04c402 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">constructor that allows one to name the structure.  <a href="classStructuralComponent.html#a84584becc23ae599457a740cca04c402">More...</a><br /></td></tr>
<tr class="separator:a84584becc23ae599457a740cca04c402 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a70dac7ebcbd8c444ef8cb85990c1a2c2 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a70dac7ebcbd8c444ef8cb85990c1a2c2">xmlPrint</a> (std::ostream &amp;) const</td></tr>
<tr class="memdesc:a70dac7ebcbd8c444ef8cb85990c1a2c2 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">print to an output stream in "pseudo" XML format (do nothing if there are no sub structures).  <a href="classStructuralComponent.html#a70dac7ebcbd8c444ef8cb85990c1a2c2">More...</a><br /></td></tr>
<tr class="separator:a70dac7ebcbd8c444ef8cb85990c1a2c2 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acc48ab0c279a2892b1523e7d046a8394 inherit pub_methods_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#acc48ab0c279a2892b1523e7d046a8394">~StructuralComponent</a> ()</td></tr>
<tr class="memdesc:acc48ab0c279a2892b1523e7d046a8394 inherit pub_methods_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">delete all the structures (call the deleteAllStructures method)  <a href="classStructuralComponent.html#acc48ab0c279a2892b1523e7d046a8394">More...</a><br /></td></tr>
<tr class="separator:acc48ab0c279a2892b1523e7d046a8394 inherit pub_methods_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classComponent"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classComponent')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classComponent.html">Component</a></td></tr>
<tr class="memitem:a49c76437f3ac3abe62ea53e8cd4caa35 inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a49c76437f3ac3abe62ea53e8cd4caa35">Component</a> (<a class="el" href="classPhysicalModel.html">PhysicalModel</a> *, std::string n=&quot;&quot;)</td></tr>
<tr class="memdesc:a49c76437f3ac3abe62ea53e8cd4caa35 inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default constructor, a component needs to know the PM it is in.  <a href="classComponent.html#a49c76437f3ac3abe62ea53e8cd4caa35">More...</a><br /></td></tr>
<tr class="separator:a49c76437f3ac3abe62ea53e8cd4caa35 inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aad29fac3b3b02575b1f6d0f0d677bf8b inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#aad29fac3b3b02575b1f6d0f0d677bf8b">getName</a> () const</td></tr>
<tr class="memdesc:aad29fac3b3b02575b1f6d0f0d677bf8b inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the name of the component  <a href="classComponent.html#aad29fac3b3b02575b1f6d0f0d677bf8b">More...</a><br /></td></tr>
<tr class="separator:aad29fac3b3b02575b1f6d0f0d677bf8b inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9ff2f59a72545b51fb465904a4be4067 inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a9ff2f59a72545b51fb465904a4be4067">getPhysicalModel</a> () const</td></tr>
<tr class="memdesc:a9ff2f59a72545b51fb465904a4be4067 inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the physical model  <a href="classComponent.html#a9ff2f59a72545b51fb465904a4be4067">More...</a><br /></td></tr>
<tr class="separator:a9ff2f59a72545b51fb465904a4be4067 inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1d6efb469db526281d2fd3b3303e15a8 inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classProperties.html">Properties</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a1d6efb469db526281d2fd3b3303e15a8">getProperties</a> ()</td></tr>
<tr class="memdesc:a1d6efb469db526281d2fd3b3303e15a8 inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the component structural properties (guarantied to be non NULL)  <a href="classComponent.html#a1d6efb469db526281d2fd3b3303e15a8">More...</a><br /></td></tr>
<tr class="separator:a1d6efb469db526281d2fd3b3303e15a8 inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a03e457e251f98e8dee5ef0232854e903 inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a03e457e251f98e8dee5ef0232854e903">isExclusive</a> () const</td></tr>
<tr class="memdesc:a03e457e251f98e8dee5ef0232854e903 inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">tell if this component is exclusive or not  <a href="classComponent.html#a03e457e251f98e8dee5ef0232854e903">More...</a><br /></td></tr>
<tr class="separator:a03e457e251f98e8dee5ef0232854e903 inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a3e4112bd2933b7d2cdd56530ecdca6ef inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a3e4112bd2933b7d2cdd56530ecdca6ef">setExclusive</a> (const bool)</td></tr>
<tr class="memdesc:a3e4112bd2933b7d2cdd56530ecdca6ef inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the exclusive flag  <a href="classComponent.html#a3e4112bd2933b7d2cdd56530ecdca6ef">More...</a><br /></td></tr>
<tr class="separator:a3e4112bd2933b7d2cdd56530ecdca6ef inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aba12093b619f8f767f1a1a1f9674012e inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#aba12093b619f8f767f1a1a1f9674012e">setName</a> (const std::string)</td></tr>
<tr class="memdesc:aba12093b619f8f767f1a1a1f9674012e inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the name of the component  <a href="classComponent.html#aba12093b619f8f767f1a1a1f9674012e">More...</a><br /></td></tr>
<tr class="separator:aba12093b619f8f767f1a1a1f9674012e inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab8378fa275af98e568a7e91d33d867af inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#ab8378fa275af98e568a7e91d33d867af">~Component</a> ()</td></tr>
<tr class="memdesc:ab8378fa275af98e568a7e91d33d867af inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor needed here as this is an abstract class (pure virtual)  <a href="classComponent.html#ab8378fa275af98e568a7e91d33d867af">More...</a><br /></td></tr>
<tr class="separator:ab8378fa275af98e568a7e91d33d867af inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a81568beacc3577d3eee4d47a4e7c2a69 inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classMultiComponent.html">MultiComponent</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a81568beacc3577d3eee4d47a4e7c2a69">getAllParentMultiComponents</a> ()</td></tr>
<tr class="memdesc:a81568beacc3577d3eee4d47a4e7c2a69 inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the list of all the Multi <a class="el" href="classComponent.html" title="A component is something that composed something and could also be a part of something. ">Component</a> that are using this <a class="el" href="classComponent.html" title="A component is something that composed something and could also be a part of something. ">Component</a>  <a href="classComponent.html#a81568beacc3577d3eee4d47a4e7c2a69">More...</a><br /></td></tr>
<tr class="separator:a81568beacc3577d3eee4d47a4e7c2a69 inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a757556f31bd64badc4208800ee761e16 inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">unsigned int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a757556f31bd64badc4208800ee761e16">getNumberOfParentMultiComponents</a> () const</td></tr>
<tr class="memdesc:a757556f31bd64badc4208800ee761e16 inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get the number of <a class="el" href="classMultiComponent.html" title="A multi-component stores other components, hence providing a way to have an tree representation of co...">MultiComponent</a> that are using this <a class="el" href="classComponent.html" title="A component is something that composed something and could also be a part of something. ">Component</a> (= nr of parent component)  <a href="classComponent.html#a757556f31bd64badc4208800ee761e16">More...</a><br /></td></tr>
<tr class="separator:a757556f31bd64badc4208800ee761e16 inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a937a0eb2fafd6397917aec4b6c88a34b inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classMultiComponent.html">MultiComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a937a0eb2fafd6397917aec4b6c88a34b">getParentMultiComponent</a> (unsigned int)</td></tr>
<tr class="memdesc:a937a0eb2fafd6397917aec4b6c88a34b inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">get a particular <a class="el" href="classMultiComponent.html" title="A multi-component stores other components, hence providing a way to have an tree representation of co...">MultiComponent</a> that is using this <a class="el" href="classComponent.html" title="A component is something that composed something and could also be a part of something. ">Component</a> (a particular parent component)  <a href="classComponent.html#a937a0eb2fafd6397917aec4b6c88a34b">More...</a><br /></td></tr>
<tr class="separator:a937a0eb2fafd6397917aec4b6c88a34b inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a929e87689dff88e8186c29fd8992641c inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a929e87689dff88e8186c29fd8992641c">addParentMultiComponent</a> (<a class="el" href="classMultiComponent.html">MultiComponent</a> *)</td></tr>
<tr class="memdesc:a929e87689dff88e8186c29fd8992641c inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">add a particular parent <a class="el" href="classMultiComponent.html" title="A multi-component stores other components, hence providing a way to have an tree representation of co...">MultiComponent</a> in the list  <a href="classComponent.html#a929e87689dff88e8186c29fd8992641c">More...</a><br /></td></tr>
<tr class="separator:a929e87689dff88e8186c29fd8992641c inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a809c3702d59a1e5ecc72c991d6849883 inherit pub_methods_classComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a809c3702d59a1e5ecc72c991d6849883">removeParentMultiComponent</a> (<a class="el" href="classMultiComponent.html">MultiComponent</a> *)</td></tr>
<tr class="memdesc:a809c3702d59a1e5ecc72c991d6849883 inherit pub_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">remove a particular parent <a class="el" href="classMultiComponent.html" title="A multi-component stores other components, hence providing a way to have an tree representation of co...">MultiComponent</a>  <a href="classComponent.html#a809c3702d59a1e5ecc72c991d6849883">More...</a><br /></td></tr>
<tr class="separator:a809c3702d59a1e5ecc72c991d6849883 inherit pub_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:a8b2ce00d302a785784fe74ca8cb304c6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCell.html#a8b2ce00d302a785784fe74ca8cb304c6">parentSC</a></td></tr>
<tr class="memdesc:a8b2ce00d302a785784fe74ca8cb304c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Keep a reference to the direct parent structural component.  <a href="#a8b2ce00d302a785784fe74ca8cb304c6">More...</a><br /></td></tr>
<tr class="separator:a8b2ce00d302a785784fe74ca8cb304c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classStructuralComponent"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classStructuralComponent')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classStructuralComponent.html">StructuralComponent</a></td></tr>
<tr class="memitem:a8e3485315bc47e8a93926c8cfccdac4f inherit pub_types_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4f">ComposedBy</a> { <a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4fa5167095e10bda559cc8ac14b68bd1a23">NOTHING</a>, 
<a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4fa56284ea8f7cfac24f049e9295e438ed6">CELLS</a>, 
<a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4fa5e6ad6318723fbd0835e923da6a55e2d">ATOMS</a>
 }<tr class="memdesc:a8e3485315bc47e8a93926c8cfccdac4f"><td class="mdescLeft">&#160;</td><td class="mdescRight">What this structural component is made of.  <a href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4f">More...</a><br /></td></tr>
</td></tr>
<tr class="separator:a8e3485315bc47e8a93926c8cfccdac4f inherit pub_types_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_attribs_classStructure"><td colspan="2" onclick="javascript:toggleInherit('pub_attribs_classStructure')"><img src="closed.png" alt="-"/>&#160;Public Attributes inherited from <a class="el" href="classStructure.html">Structure</a></td></tr>
<tr class="memitem:a711e022b372da3d0bdfd5ea5bb34c91b inherit pub_attribs_classStructure"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a711e022b372da3d0bdfd5ea5bb34c91b">hasIndex</a></td></tr>
<tr class="memdesc:a711e022b372da3d0bdfd5ea5bb34c91b inherit pub_attribs_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">indicate if the <a class="el" href="classStructure.html" title="Pure virtual class that represent an element of the structure. ">Structure</a> has an index (which is not the case all the time)  <a href="classStructure.html#a711e022b372da3d0bdfd5ea5bb34c91b">More...</a><br /></td></tr>
<tr class="separator:a711e022b372da3d0bdfd5ea5bb34c91b inherit pub_attribs_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_methods_classComponent"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classComponent')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="classComponent.html">Component</a></td></tr>
<tr class="memitem:ae71ca92f0a28c65d7aa7e3c4a874da85 inherit pro_methods_classComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#ae71ca92f0a28c65d7aa7e3c4a874da85">deleteProperties</a> ()</td></tr>
<tr class="memdesc:ae71ca92f0a28c65d7aa7e3c4a874da85 inherit pro_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">delete the "properties" pointer and set it to NULL  <a href="classComponent.html#ae71ca92f0a28c65d7aa7e3c4a874da85">More...</a><br /></td></tr>
<tr class="separator:ae71ca92f0a28c65d7aa7e3c4a874da85 inherit pro_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab35e1ee7242ea4829cf240714cd907f2 inherit pro_methods_classComponent"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#ab35e1ee7242ea4829cf240714cd907f2">removeFromParents</a> ()</td></tr>
<tr class="memdesc:ab35e1ee7242ea4829cf240714cd907f2 inherit pro_methods_classComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">this tell the parent components that this component is removed from memory.  <a href="classComponent.html#ab35e1ee7242ea4829cf240714cd907f2">More...</a><br /></td></tr>
<tr class="separator:ab35e1ee7242ea4829cf240714cd907f2 inherit pro_methods_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classStructure"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classStructure')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classStructure.html">Structure</a></td></tr>
<tr class="memitem:a693e6b047fc6bb216b7646e0c2599070 inherit pro_attribs_classStructure"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructureProperties.html">StructureProperties</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">properties</a></td></tr>
<tr class="memdesc:a693e6b047fc6bb216b7646e0c2599070 inherit pro_attribs_classStructure"><td class="mdescLeft">&#160;</td><td class="mdescRight">Property of the current structure.  <a href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">More...</a><br /></td></tr>
<tr class="separator:a693e6b047fc6bb216b7646e0c2599070 inherit pro_attribs_classStructure"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classStructuralComponent"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classStructuralComponent')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classStructuralComponent.html">StructuralComponent</a></td></tr>
<tr class="memitem:a397b3b4a6ec8f5a484ddea2a6a698376 inherit pro_attribs_classStructuralComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a397b3b4a6ec8f5a484ddea2a6a698376">atomList</a></td></tr>
<tr class="memdesc:a397b3b4a6ec8f5a484ddea2a6a698376 inherit pro_attribs_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">List of all the atoms of this structural component, build the first time.  <a href="classStructuralComponent.html#a397b3b4a6ec8f5a484ddea2a6a698376">More...</a><br /></td></tr>
<tr class="separator:a397b3b4a6ec8f5a484ddea2a6a698376 inherit pro_attribs_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a231825160fea41679e12bd36cf9f3746 inherit pro_attribs_classStructuralComponent"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classStructure.html">Structure</a> * &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classStructuralComponent.html#a231825160fea41679e12bd36cf9f3746">structures</a></td></tr>
<tr class="memdesc:a231825160fea41679e12bd36cf9f3746 inherit pro_attribs_classStructuralComponent"><td class="mdescLeft">&#160;</td><td class="mdescRight">List of the structure representing this component, all the structure in this list are either all <a class="el" href="classAtom.html" title="An atom has an unique index in the physical model object, a 3D position, and different basic properti...">Atom</a> or all <a class="el" href="classCell.html" title="A cell has an unique index in the physical model object, is composed by atoms, and different basic pr...">Cell</a> (no mix!)  <a href="classStructuralComponent.html#a231825160fea41679e12bd36cf9f3746">More...</a><br /></td></tr>
<tr class="separator:a231825160fea41679e12bd36cf9f3746 inherit pro_attribs_classStructuralComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classComponent"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classComponent')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classComponent.html">Component</a></td></tr>
<tr class="memitem:a64a48ad79666e51a11c771d7d361253d inherit pro_attribs_classComponent"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classProperties.html">Properties</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classComponent.html#a64a48ad79666e51a11c771d7d361253d">properties</a></td></tr>
<tr class="separator:a64a48ad79666e51a11c771d7d361253d inherit pro_attribs_classComponent"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A cell has an unique index in the physical model object, is composed by atoms, and different basic properties. </p>
<p>It is the most basic component composing a physical model. </p>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a id="a403ded9e8afd04ec491decc6273417c2"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a403ded9e8afd04ec491decc6273417c2">&#9670;&nbsp;</a></span>Cell() <span class="overload">[1/3]</span></h2>

<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">Cell::Cell </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> *&#160;</td>
          <td class="paramname"><em>myPM</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">StructureProperties::GeometricType</a>&#160;</td>
          <td class="paramname"><em>t</em>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>constructor that generates a unique index </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
    <tr><td class="paramname">t</td><td>the type of the cell </td></tr>
  </table>
  </dd>
</dl>

<p class="reference">References <a class="el" href="classCell.html#a8b2ce00d302a785784fe74ca8cb304c6">parentSC</a>, and <a class="el" href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">Structure::properties</a>.</p>

<p class="reference">Referenced by <a class="el" href="classCell.html#a5d0efbbf7007880c16cfc783ff9f7cbd">getQuadFaces()</a>, and <a class="el" href="classCell.html#aa0af895373cd4d81fdaa1a1306d8b084">getTriangleFaces()</a>.</p>

</div>
</div>
<a id="a36fa459409a8b8dbd6ad1994aea484d3"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a36fa459409a8b8dbd6ad1994aea484d3">&#9670;&nbsp;</a></span>Cell() <span class="overload">[2/3]</span></h2>

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<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">Cell::Cell </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> *&#160;</td>
          <td class="paramname"><em>myPM</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">physicalModel::Cell&#160;</td>
          <td class="paramname"><em>xmlCell</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td>
          <td class="paramname"><em>sc</em>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>constructor from xml node: try to read and get the parameters from xml </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
    <tr><td class="paramname">xmlCell</td><td>the xml node to read to get the information </td></tr>
    <tr><td class="paramname">sc</td><td>the direct parent structural component that owns this cell </td></tr>
  </table>
  </dd>
</dl>

<p class="reference">References <a class="el" href="classStructuralComponent.html#ac885c7b03b4710985c26fbb8fdbdd958">StructuralComponent::addStructure()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a10a947ffcd63f50787f75a33f512f2b1">StructureProperties::ATOM</a>, <a class="el" href="classPhysicalModel.html#a99b50a69eb79e8f4772ab8ccf46a5525">PhysicalModel::getAtom()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a1e936c531a196f8454c3a10bb7841e80">StructureProperties::HEXAHEDRON</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a606927b36de060292ab110c0ffb8fda6">StructureProperties::INVALID</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a4e649a65336a327b2b6a38e937d6e26d">StructureProperties::LINE</a>, <a class="el" href="classCell.html#a8b2ce00d302a785784fe74ca8cb304c6">parentSC</a>, <a class="el" href="classStructuralComponent.html#a57f051a5ab620854a3ad6fe85fb6305d">StructuralComponent::plannedNumberOfStructures()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a05442bd0a1696fd9414348c072a805df">StructureProperties::POLY_LINE</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731ac6bd3ea86bc8cff47b41e36049649f96">StructureProperties::POLY_VERTEX</a>, <a class="el" href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">Structure::properties</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731ae55eaaa4a01ee2d554c70f2e785231bf">StructureProperties::PYRAMID</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a70cd9e366650ca00912d1cbe9b61eca2">StructureProperties::QUAD</a>, <a class="el" href="classStructuralComponent.html#a2fbcf4b58643d0f45a5e9f5483172ec0">StructuralComponent::setColor()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a97b9c987bb76cf4e7cc9c0a0aa4704ce">StructureProperties::TETRAHEDRON</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731aafad539f241ab0931a414284f3658974">StructureProperties::TRIANGLE</a>, and <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a74a53207505536ceb0ad64733d2a8a0b">StructureProperties::WEDGE</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a7c1453ccecf89d2125f54dd2c94e1145">&#9670;&nbsp;</a></span>Cell() <span class="overload">[3/3]</span></h2>

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          <td class="memname">Cell::Cell </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classPhysicalModel.html">PhysicalModel</a> *&#160;</td>
          <td class="paramname"><em>myPM</em>, </td>
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          <td class="paramtype">const <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731">StructureProperties::GeometricType</a>&#160;</td>
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<p>When you know the index of the cell, use this constructor. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">myPM</td><td>the physical model the atom belongs to </td></tr>
    <tr><td class="paramname">t</td><td>the type of the cell </td></tr>
    <tr><td class="paramname">ind</td><td>give the unique index </td></tr>
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<p class="reference">References <a class="el" href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">Structure::properties</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a9fa559f7a28e2b4336c6879ca09304d8">&#9670;&nbsp;</a></span>~Cell()</h2>

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          <td class="memname">Cell::~Cell </td>
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<p>the destructor, my tailor. BECAREFUL: the atoms should not not be deleted here... </p>

<p class="reference">References <a class="el" href="classStructuralComponent.html#a397b3b4a6ec8f5a484ddea2a6a698376">StructuralComponent::atomList</a>, <a class="el" href="classCell.html#a7348a664e5fbb2167b12015b2af2b414">deleteAllStructures()</a>, <a class="el" href="classComponent.html#ae71ca92f0a28c65d7aa7e3c4a874da85">Component::deleteProperties()</a>, <a class="el" href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">Structure::properties</a>, and <a class="el" href="classComponent.html#ab35e1ee7242ea4829cf240714cd907f2">Component::removeFromParents()</a>.</p>

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<h2 class="groupheader">Member Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a60b6ec6eab9c9156bb06302895425e78">&#9670;&nbsp;</a></span>addStructuralComponent()</h2>

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          <td class="memname">void Cell::addStructuralComponent </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td>
          <td class="paramname"><em>sc</em></td><td>)</td>
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<p>add a particular <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> in the list (and set parentSC if null) </p>

<p>Reimplemented from <a class="el" href="classStructure.html#aee69ddf2513ad465e91281c91597f42e">Structure</a>.</p>

<p class="reference">References <a class="el" href="classStructure.html#aee69ddf2513ad465e91281c91597f42e">Structure::addStructuralComponent()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a4904ddd31ac8e999e79b9e75e7441d0d">&#9670;&nbsp;</a></span>composedBy()</h2>

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          <td class="memname"><a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4f">Cell::ComposedBy</a> Cell::composedBy </td>
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<p>overloaded from Structural component, always return <a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4fa5e6ad6318723fbd0835e923da6a55e2d" title="the structural component is made of atoms ">StructuralComponent::ATOMS</a> </p>

<p>Reimplemented from <a class="el" href="classStructuralComponent.html#a9ff301c8ed305007a1b2381bf8c293d2">StructuralComponent</a>.</p>

<p class="reference">References <a class="el" href="classStructuralComponent.html#a8e3485315bc47e8a93926c8cfccdac4fa5e6ad6318723fbd0835e923da6a55e2d">StructuralComponent::ATOMS</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a7348a664e5fbb2167b12015b2af2b414">&#9670;&nbsp;</a></span>deleteAllStructures()</h2>

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          <td class="memname">void Cell::deleteAllStructures </td>
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<p>This method overload the one defined in <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a>. </p>
<p>The difference here is that the atoms composing the cell ARE NOT delete, still the list is cleared. After a call to this method getNumberOfSubStructures() should return 0 </p>

<p>Reimplemented from <a class="el" href="classStructuralComponent.html#a75935b479acaf324bdf4a85fa307430e">StructuralComponent</a>.</p>

<p class="reference">References <a class="el" href="classStructure.html#a0eb7c50fc8aff59e51ec6c895a79601b">Structure::removeStructuralComponent()</a>, and <a class="el" href="classStructuralComponent.html#a231825160fea41679e12bd36cf9f3746">StructuralComponent::structures</a>.</p>

<p class="reference">Referenced by <a class="el" href="classCell.html#a9fa559f7a28e2b4336c6879ca09304d8">~Cell()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#aada2c3ed99a94c8523ea7cfb8865b296">&#9670;&nbsp;</a></span>getParentSC()</h2>

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<p>Get the direct parent structural that own this cell. </p>

<p class="reference">Referenced by <a class="el" href="classPMLComponent.html#ad8dfbff11cdfb0d4c31a929de3229da1">PMLComponent::selectCell()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#aa15ae2bf870c36166041d8d840d34957">&#9670;&nbsp;</a></span>getProperties()</h2>

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          <td class="memname"><a class="el" href="classCellProperties.html">CellProperties</a> * Cell::getProperties </td>
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<p>return the property </p>

<p class="reference">References <a class="el" href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">Structure::properties</a>.</p>

<p class="reference">Referenced by <a class="el" href="classPMLExplorerWidget.html#a0c6892e76e96a5e12c81fda6c6c9db2a">PMLExplorerWidget::createCellPropertyList()</a>, <a class="el" href="classCellDCProperties.html#afd2dc3cd94f90c2a14b78a55a4d965f0">CellDCProperties::event()</a>, <a class="el" href="classReference.html#aa617c2c9b8f0a034fd8bdd944fe0b24e">Reference::getDistanceToTriangularMesh()</a>, <a class="el" href="classCell.html#a5d0efbbf7007880c16cfc783ff9f7cbd">getQuadFaces()</a>, <a class="el" href="classCell.html#aa0af895373cd4d81fdaa1a1306d8b084">getTriangleFaces()</a>, <a class="el" href="classCell.html#ab5f4ba86ac684c857b3aa5aa8209d216">normal()</a>, <a class="el" href="classCell.html#a4e63181e04a854e214055338e695b5a4">surface()</a>, <a class="el" href="classCellDCProperties.html#aaaced537e98a9ca71871db29c650d193">CellDCProperties::updateProperties()</a>, and <a class="el" href="classCell.html#abc30c950b76c1c17ffc173e06bf3ee59">volume()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a5d0efbbf7007880c16cfc783ff9f7cbd">&#9670;&nbsp;</a></span>getQuadFaces()</h2>

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          <td class="memname"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> * Cell::getQuadFaces </td>
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<p>Return a new structural component directly representing the <a class="el" href="classCell.html" title="A cell has an unique index in the physical model object, is composed by atoms, and different basic pr...">Cell</a> as a list of quad faces (when possible) </p>

<p class="reference">References <a class="el" href="classStructuralComponent.html#ac885c7b03b4710985c26fbb8fdbdd958">StructuralComponent::addStructure()</a>, <a class="el" href="classCell.html#a403ded9e8afd04ec491decc6273417c2">Cell()</a>, <a class="el" href="classComponent.html#a9ff2f59a72545b51fb465904a4be4067">Component::getPhysicalModel()</a>, <a class="el" href="classCell.html#aa15ae2bf870c36166041d8d840d34957">getProperties()</a>, <a class="el" href="classStructuralComponent.html#a2bfab6723909acea409f6a09b25a6676">StructuralComponent::getStructure()</a>, <a class="el" href="classStructure.html#a8fd619e1b2635bd473bf182d0528f9c7">Structure::getType()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a1e936c531a196f8454c3a10bb7841e80">StructureProperties::HEXAHEDRON</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a70cd9e366650ca00912d1cbe9b61eca2">StructureProperties::QUAD</a>, <a class="el" href="classStructuralComponent.html#a353f98e69702f212c9b7683757aeca59">StructuralComponent::StructuralComponent()</a>, and <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a74a53207505536ceb0ad64733d2a8a0b">StructureProperties::WEDGE</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#aa0af895373cd4d81fdaa1a1306d8b084">&#9670;&nbsp;</a></span>getTriangleFaces()</h2>

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          <td class="memname"><a class="el" href="classStructuralComponent.html">StructuralComponent</a> * Cell::getTriangleFaces </td>
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<p>Return a new structural component directly representing the <a class="el" href="classCell.html" title="A cell has an unique index in the physical model object, is composed by atoms, and different basic pr...">Cell</a> as a list of triangular faces (when possible) </p>

<p class="reference">References <a class="el" href="classStructuralComponent.html#ac885c7b03b4710985c26fbb8fdbdd958">StructuralComponent::addStructure()</a>, <a class="el" href="classCell.html#a403ded9e8afd04ec491decc6273417c2">Cell()</a>, <a class="el" href="classComponent.html#a9ff2f59a72545b51fb465904a4be4067">Component::getPhysicalModel()</a>, <a class="el" href="classCell.html#aa15ae2bf870c36166041d8d840d34957">getProperties()</a>, <a class="el" href="classStructuralComponent.html#a2bfab6723909acea409f6a09b25a6676">StructuralComponent::getStructure()</a>, <a class="el" href="classStructure.html#a8fd619e1b2635bd473bf182d0528f9c7">Structure::getType()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a1e936c531a196f8454c3a10bb7841e80">StructureProperties::HEXAHEDRON</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a70cd9e366650ca00912d1cbe9b61eca2">StructureProperties::QUAD</a>, <a class="el" href="classStructuralComponent.html#a353f98e69702f212c9b7683757aeca59">StructuralComponent::StructuralComponent()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a97b9c987bb76cf4e7cc9c0a0aa4704ce">StructureProperties::TETRAHEDRON</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731aafad539f241ab0931a414284f3658974">StructureProperties::TRIANGLE</a>, and <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a74a53207505536ceb0ad64733d2a8a0b">StructureProperties::WEDGE</a>.</p>

<p class="reference">Referenced by <a class="el" href="classCell.html#a4e63181e04a854e214055338e695b5a4">surface()</a>, and <a class="el" href="classCell.html#abc30c950b76c1c17ffc173e06bf3ee59">volume()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#afdb196f45963f5a29870371d7134681e">&#9670;&nbsp;</a></span>isInstanceOf()</h2>

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<p>return true only if the parameter is equal to "MultiComponent" </p>

<p>Reimplemented from <a class="el" href="classStructuralComponent.html#a44aefcdce24ae51334c501ef2eee8e77">StructuralComponent</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#aa5f738ea0114bc44c38968ff15380529">&#9670;&nbsp;</a></span>makePrintData()</h2>

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          <td class="paramtype">const <a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td>
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<p>is this sc the one that will be the one that will make the cell to print out all its data or is this a sc that will just print out the cell ref? </p>

<p class="reference">References <a class="el" href="classStructure.html#a58d9d946f94837c5a2141d3c7f250adf">Structure::getNumberOfStructuralComponents()</a>, <a class="el" href="classStructure.html#ae259369164469377b42ba25912439338">Structure::getStructuralComponent()</a>, and <a class="el" href="classComponent.html#a03e457e251f98e8dee5ef0232854e903">Component::isExclusive()</a>.</p>

<p class="reference">Referenced by <a class="el" href="classPhysicalModel.html#ad4c0d5affa7af7f897b34fca9e6a0b0b">PhysicalModel::optimizeIndexes()</a>, and <a class="el" href="classCell.html#a27d9e9f3241501604f8ede88d72ce9ba">xmlPrint()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#ab5f4ba86ac684c857b3aa5aa8209d216">&#9670;&nbsp;</a></span>normal()</h2>

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<p>compute the normal of the facet Warning : Only available for QUAD and TRIANGLE type cells </p>

<p class="reference">References <a class="el" href="classCell.html#aa15ae2bf870c36166041d8d840d34957">getProperties()</a>, <a class="el" href="classStructuralComponent.html#a2bfab6723909acea409f6a09b25a6676">StructuralComponent::getStructure()</a>, <a class="el" href="classStructure.html#a8fd619e1b2635bd473bf182d0528f9c7">Structure::getType()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a70cd9e366650ca00912d1cbe9b61eca2">StructureProperties::QUAD</a>, and <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731aafad539f241ab0931a414284f3658974">StructureProperties::TRIANGLE</a>.</p>

<p class="reference">Referenced by <a class="el" href="classCell.html#a4e63181e04a854e214055338e695b5a4">surface()</a>, and <a class="el" href="classCell.html#abc30c950b76c1c17ffc173e06bf3ee59">volume()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a60416d21bf0b6d89e016a1ceebdc31b7">&#9670;&nbsp;</a></span>setIndex()</h2>

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          <td class="memname">bool Cell::setIndex </td>
          <td>(</td>
          <td class="paramtype">const unsigned int&#160;</td>
          <td class="paramname"><em>index</em></td><td>)</td>
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<p>set the index. </p>
<p>The index <b>have to be unique</b> otherwise this method has no effect. The sub-classes method will check that this index is not in use. </p><dl class="section return"><dt>Returns</dt><dd>true only if the index of the structure was changed </dd></dl>

<p>Reimplemented from <a class="el" href="classStructure.html#afd2e8e677876ca72829350653597b83b">Structure</a>.</p>

<p class="reference">References <a class="el" href="classPhysicalModel.html#aef5348057130720b392c3d7f6023e104">PhysicalModel::addGlobalIndexCellPair()</a>, <a class="el" href="classComponent.html#a9ff2f59a72545b51fb465904a4be4067">Component::getPhysicalModel()</a>, and <a class="el" href="classStructure.html#afd2e8e677876ca72829350653597b83b">Structure::setIndex()</a>.</p>

<p class="reference">Referenced by <a class="el" href="classPhysicalModel.html#ad4c0d5affa7af7f897b34fca9e6a0b0b">PhysicalModel::optimizeIndexes()</a>, and <a class="el" href="classPMLComponent.html#ab75a16ffec6e7fb6cb532d847b6279d8">PMLComponent::parseMultiComponent()</a>.</p>

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<a id="a3ec2b6964350dff3d30f8ff6692eeb1c"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a3ec2b6964350dff3d30f8ff6692eeb1c">&#9670;&nbsp;</a></span>signedVolumeTriangle()</h2>

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          <td class="memname">double Cell::signedVolumeTriangle </td>
          <td>(</td>
          <td class="paramtype">double&#160;</td>
          <td class="paramname"><em>p1</em>[3], </td>
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<p>Compute the volume of a triangle with the origin of the coordinate system. </p>
<p>If the triangle is A,B,C it computes the volume of the tetrahedron OABC. </p><dl class="section see"><dt>See also</dt><dd>Zhang, C., and Chen, T., Efficient feature extraction for 2D/3D objects in mesh representation</dd></dl>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">p1</td><td>position of Triangle <a class="el" href="classAtom.html" title="An atom has an unique index in the physical model object, a 3D position, and different basic properti...">Atom</a> </td></tr>
    <tr><td class="paramname">p2</td><td>position of Triangle <a class="el" href="classAtom.html" title="An atom has an unique index in the physical model object, a 3D position, and different basic properti...">Atom</a> </td></tr>
    <tr><td class="paramname">p3</td><td>position of Triangle <a class="el" href="classAtom.html" title="An atom has an unique index in the physical model object, a 3D position, and different basic properti...">Atom</a></td></tr>
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<dl class="section return"><dt>Returns</dt><dd>double a signed volume </dd></dl>

<p class="reference">Referenced by <a class="el" href="classCell.html#abc30c950b76c1c17ffc173e06bf3ee59">volume()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a4e63181e04a854e214055338e695b5a4">&#9670;&nbsp;</a></span>surface()</h2>

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          <td class="memname">double Cell::surface </td>
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<p>Compute the surface of the cell. </p>

<p class="reference">References <a class="el" href="classStructuralComponent.html#a943e4c8380ec9de619b41d469520ac43">StructuralComponent::getCell()</a>, <a class="el" href="classStructuralComponent.html#af9d42904cb5d1875c63625bd502d5f96">StructuralComponent::getNumberOfCells()</a>, <a class="el" href="classStructuralComponent.html#a494306f66d840ba856b647353f16e9c8">StructuralComponent::getNumberOfStructures()</a>, <a class="el" href="classCell.html#aa15ae2bf870c36166041d8d840d34957">getProperties()</a>, <a class="el" href="classStructuralComponent.html#a2bfab6723909acea409f6a09b25a6676">StructuralComponent::getStructure()</a>, <a class="el" href="classCell.html#aa0af895373cd4d81fdaa1a1306d8b084">getTriangleFaces()</a>, <a class="el" href="classStructure.html#a8fd619e1b2635bd473bf182d0528f9c7">Structure::getType()</a>, <a class="el" href="classCell.html#ab5f4ba86ac684c857b3aa5aa8209d216">normal()</a>, <a class="el" href="classCell.html#a4e63181e04a854e214055338e695b5a4">surface()</a>, and <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731aafad539f241ab0931a414284f3658974">StructureProperties::TRIANGLE</a>.</p>

<p class="reference">Referenced by <a class="el" href="classMonitorSurface.html#af2edd2d25ddecf7f542c446ba256263d">MonitorSurface::calculate()</a>, <a class="el" href="classCell.html#a4e63181e04a854e214055338e695b5a4">surface()</a>, and <a class="el" href="classCell.html#abc30c950b76c1c17ffc173e06bf3ee59">volume()</a>.</p>

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<a id="abc30c950b76c1c17ffc173e06bf3ee59"></a>
<h2 class="memtitle"><span class="permalink"><a href="#abc30c950b76c1c17ffc173e06bf3ee59">&#9670;&nbsp;</a></span>volume()</h2>

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          <td class="memname">double Cell::volume </td>
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<p>Compute the volume of the cell. </p>

<p class="reference">References <a class="el" href="classStructuralComponent.html#a943e4c8380ec9de619b41d469520ac43">StructuralComponent::getCell()</a>, <a class="el" href="classStructuralComponent.html#af9d42904cb5d1875c63625bd502d5f96">StructuralComponent::getNumberOfCells()</a>, <a class="el" href="classCell.html#aa15ae2bf870c36166041d8d840d34957">getProperties()</a>, <a class="el" href="classStructuralComponent.html#a2bfab6723909acea409f6a09b25a6676">StructuralComponent::getStructure()</a>, <a class="el" href="classCell.html#aa0af895373cd4d81fdaa1a1306d8b084">getTriangleFaces()</a>, <a class="el" href="classStructure.html#a8fd619e1b2635bd473bf182d0528f9c7">Structure::getType()</a>, <a class="el" href="classCell.html#ab5f4ba86ac684c857b3aa5aa8209d216">normal()</a>, <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731a70cd9e366650ca00912d1cbe9b61eca2">StructureProperties::QUAD</a>, <a class="el" href="classCell.html#a3ec2b6964350dff3d30f8ff6692eeb1c">signedVolumeTriangle()</a>, <a class="el" href="classCell.html#a4e63181e04a854e214055338e695b5a4">surface()</a>, and <a class="el" href="classStructureProperties.html#a9180a07ccc47844f526e879201d75731aafad539f241ab0931a414284f3658974">StructureProperties::TRIANGLE</a>.</p>

<p class="reference">Referenced by <a class="el" href="classMonitorVolume.html#a329828fe24fa4cbb0b28809146b8d46c">MonitorVolume::calculate()</a>.</p>

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<h2 class="memtitle"><span class="permalink"><a href="#a27d9e9f3241501604f8ede88d72ce9ba">&#9670;&nbsp;</a></span>xmlPrint()</h2>

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          <td class="memname">void Cell::xmlPrint </td>
          <td>(</td>
          <td class="paramtype">std::ostream &amp;&#160;</td>
          <td class="paramname"><em>o</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="classStructuralComponent.html">StructuralComponent</a> *&#160;</td>
          <td class="paramname"><em>sc</em>&#160;</td>
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          <td></td>
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<p>print to an output stream in "pseudo" XML format. </p>
<p>If the <a class="el" href="classStructuralComponent.html" title="A structural component is composed either by cell or by atoms. ">StructuralComponent</a> that calls this method is not the first in the list of composing SC, then a cellRef tag is printed (otherwise the list of atom is printed). </p>

<p>Implements <a class="el" href="classStructure.html#a480a6874d516d72c8d3632973665c39a">Structure</a>.</p>

<p class="reference">References <a class="el" href="classStructuralComponentProperties.html#a2dbd9d325c84abdaf5bbc5318eeefbefa1709c317d84a613477b780821a035748">StructuralComponentProperties::DEFAULT</a>, <a class="el" href="classStructuralComponent.html#a74ca00a92295f32d5e5fcf0a7f96cd0f">StructuralComponent::getColor()</a>, <a class="el" href="classStructure.html#a04b2fc52d7cc2af4356620f1d7e09c18">Structure::getIndex()</a>, <a class="el" href="classCell.html#aa5f738ea0114bc44c38968ff15380529">makePrintData()</a>, <a class="el" href="classStructure.html#a693e6b047fc6bb216b7646e0c2599070">Structure::properties</a>, <a class="el" href="classComponent.html#a64a48ad79666e51a11c771d7d361253d">Component::properties</a>, and <a class="el" href="classStructuralComponent.html#a231825160fea41679e12bd36cf9f3746">StructuralComponent::structures</a>.</p>

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<h2 class="groupheader">Member Data Documentation</h2>
<a id="a8b2ce00d302a785784fe74ca8cb304c6"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a8b2ce00d302a785784fe74ca8cb304c6">&#9670;&nbsp;</a></span>parentSC</h2>

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          <td class="memname"><a class="el" href="classStructuralComponent.html">StructuralComponent</a>* Cell::parentSC</td>
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<p>Keep a reference to the direct parent structural component. </p>

<p class="reference">Referenced by <a class="el" href="classCell.html#a403ded9e8afd04ec491decc6273417c2">Cell()</a>.</p>

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<hr/>The documentation for this class was generated from the following files:<ul>
<li><a class="el" href="Cell_8h_source.html">Cell.h</a></li>
<li><a class="el" href="Cell_8cpp.html">Cell.cpp</a></li>
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