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<title>Computer Assited Medical Intervention Tool Kit: Member List</title>
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<div id="projectname">Computer Assited Medical Intervention Tool Kit
 <span id="projectnumber">version 4.0</span>
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<div class="title">PhysicalModel Member List</div> </div>
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<div class="contents">
<p>This is the complete list of members for <a class="el" href="classPhysicalModel.html">PhysicalModel</a>, including all inherited members.</p>
<table class="directory">
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#ab31f3e96e72cc8a2ecf1d65a9e3be2c1">addAtom</a>(Atom *)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a9815829e85b3322c81e3dadda6b1e892">addGlobalIndexAtomPair</a>(std::GlobalIndexStructurePair)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#aef5348057130720b392c3d7f6023e104">addGlobalIndexCellPair</a>(std::GlobalIndexStructurePair)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a26c047cb7d56dfae6ab55b37c071c35f">atomMap</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a5b7dbfc448d6ad2f93939acd413f9d2b">atoms</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#aaae93625f2635f51ea9df223e4b8c717">cellIndexOptimized</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a3f879dfc22b9b87c4ab452ed07f1fe46">cellMap</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#ae53fe9d0d9a389d3be482c48c9352331">clear</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a686f1ddc613fc1cd5b9f5f7cf987b895">exclusiveComponents</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#aff8a12ee78a49eec540ebe21419e83fd">exportAnsysMesh</a>(std::string filename)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a20029f79cf4097475ba6860432435d3d">exportPatran</a>(std::string filename)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a99b50a69eb79e8f4772ab8ccf46a5525">getAtom</a>(const unsigned int id)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#ae720fd27ed439db6026e8e437b51e22d">getAtoms</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a377cf70ec066034a4948eb104f5c1622">getCell</a>(const unsigned int id)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#ab849d6a3ea558764b74c334c67afcbd9">getComponentByName</a>(const std::string n)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#ae4e6104ed6af9e7fb01ce137896c2bac">getExclusiveComponent</a>(const unsigned int) const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#aa2742c22afe5a7d2c9abc457de463f5d">getExclusiveComponents</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a4d069c5ccabcf75d3c0313c45c2794f9">getInformativeComponent</a>(const unsigned int) const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#afca3e6ddf7a37d43e1de69d9decdaa67">getInformativeComponents</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#ace0ee53889df89425668bcce143d8651">getName</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a073e0385af50a80e6d8041d5d285d2a1">getNumberOfAtoms</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a4b8fb9f8b518298c44c985230a99c96e">getNumberOfCells</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#ad87eec82fcd26cf5cf99274272a6800f">getNumberOfExclusiveComponents</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#aadd1b7490c09c7fd8b5db351cd2320cc">getNumberOfInformativeComponents</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a307bb4c8db3e1b3ff38254de498b0d20">getPositionPointer</a>() const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a2fd2e7bb429789d37916591c37c65e78">getPositionPointer</a>(const unsigned int index) const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a0082cd2e982102edaaac4d822f57d2e9">getPositionPointer</a>(const Atom *a) const</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a09cfc314c89fd28e35d754dd9fa1bac2">getProperties</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a96148b042fa64bab2e74f798fc10d6b4">getStructureByName</a>(const std::string n)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#ab33d6a8e5c73880efc6ed7a3f7d19ed0">informativeComponents</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a1b277da831f061d5e322f6d64ba567f5">init</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a17a9b91137ac9c6e8b8c3c2239df8a49">isModified</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#abf036dd04d9a8c9bb44ec6a8b9a52d05">isModifiedFlag</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a4afe71578c7984fa11b4a789ae919eab">optimizedCellList</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#aec7cd1687537d7bfe84c6de7b5197cfd">optimizeIndexes</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#ad4c0d5affa7af7f897b34fca9e6a0b0b">optimizeIndexes</a>(MultiComponent *, unsigned int *)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a762633cc73da0548ac549ac83becee86">parseAtoms</a>(physicalModel::Atoms atomsRoot)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#af39a668b88a9fe35bb30b05d2dd0a0bd">parseComponents</a>(physicalModel::MultiComponent mcFather, Component *father, bool isExclusive)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a390622b07737de73554bdb0660e6b0d9">parseTree</a>(std::auto_ptr< physicalModel::PhysicalModel > root, std::string defaultName)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a3af2949215c8764f63303a38b38bb10b">PhysicalModel</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a9278198ab729a3fa1ad3741907479132">PhysicalModel</a>(const char *fileName, PtrToSetProgressFunction pspf=NULL)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a8c8b0df0f3b82fbb1cd51c2f874500b9">positionPtr</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#aeac6ad124a14f8fa7db82f5d6d1a0373">properties</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a9cf224cead2e202d9b72997a0e9344d3">setAtomPosition</a>(Atom *atom, const double pos[3])</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#aefaeddf0b7e61ff35d91ac97de791b99">setAtoms</a>(StructuralComponent *, bool deleteOld=true)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#ae64ffb5c699270a30492e9bba5ac4f84">setExclusiveComponents</a>(MultiComponent *)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#af6ce575d66e2c64943e1b24dfe5e02fd">setInformativeComponents</a>(MultiComponent *)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a022a88be2205e8d3575e050b75aead00">setModified</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a97f90f110f5cdbd53abe36001402459b">setName</a>(const std::string)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a9aa8d3423a5b8821e94c2f4338fa764a">setProgress</a>(const float donePercentage)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a2dec92e3499a21a23ab3ecafc370e27f">setProgressFunction</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#afb5fcd6e5df1538c115e351a3e330cd5">VERSION</a></td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#ac1fe8c097747e7697143b6ceda34bfae">xmlPrint</a>(std::ostream &o, bool opt=false)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classPhysicalModel.html#a5461b3949b7217839e7f0934df559271">xmlRead</a>(const char *n)</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classPhysicalModel.html#a04539a0b1a1db61537041c51019853bf">~PhysicalModel</a>()</td><td class="entry"><a class="el" href="classPhysicalModel.html">PhysicalModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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