This file is indexed.

/usr/include/ASL/num/aslLBGKBC.h is in libasl-dev 0.1.7-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
/*
 * Advanced Simulation Library <http://asl.org.il>
 * 
 * Copyright 2015 Avtech Scientific <http://avtechscientific.com>
 *
 *
 * This file is part of Advanced Simulation Library (ASL).
 *
 * ASL is free software: you can redistribute it and/or modify it
 * under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, version 3 of the License.
 *
 * ASL is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with ASL. If not, see <http://www.gnu.org/licenses/>.
 *
 */


#ifndef ASLLBGKBC_H
#define ASLLBGKBC_H

#include "aslBCond.h"
#include "acl/aclMath/aclVectorOfElementsDef.h"

namespace acl{
	class Kernel;
	typedef std::shared_ptr<acl::Kernel> SPKernel;
	class KernelMerger; 
	typedef std::shared_ptr<acl::KernelMerger> SPKernelMerger;
}

namespace asl
{
	class LBGK;
	typedef std::shared_ptr<LBGK> SPLBGK;
	class PositionFunction;
	typedef std::shared_ptr<PositionFunction> SPPositionFunction;


	class BCLBGKCommon:public BCond
	{
		protected:
			SPLBGK num;
			std::vector<acl::SPKernel> kernels;
			acl::SPKernelMerger km;

			AVec<int> directionGroupsShifts;
			AVec<int> directionGroupsSizes;

			void sortDirections();
		public:
			BCLBGKCommon(SPLBGK nm);
			virtual void execute();			
	};
	
	/// Bondary condition corresponding to a rigid wall (\f$ \vec u=0\f$)
	/**	 
		 \ingroup TransportProcessesBC
		 The class realizes simple bounce back boundary conditions  
		 \f[ \vec v =0,\; \nabla P = 0 \f]
	*/
	class BCNoSlip: public BCLBGKCommon
	{		
		public:
			BCNoSlip(SPLBGK nm);
			virtual void init();			
	};

	/// Bondary condition corresponding an in- or outflow boundary conditions with a given pressure
	/**	 
		 \ingroup TransportProcessesBC
		 \f[ \vec v =0,\; P = Const \f]		 
	*/
	class BCConstantPressure: public BCLBGKCommon
	{		
		protected:
			acl::VectorOfElements pressure;
		public:
			BCConstantPressure(SPLBGK nm, const acl::VectorOfElements & p);
			virtual void init();			
	};

	/// Bondary condition corresponding wall with given velocity for uncompressible
	/**	 
		 \ingroup TransportProcessesBC
		 velocity value is valid for both tagential and normal components.
 		 \f[ \vec v =\vec v_0,\; \nabla P = 0 \f]		 

		 \f[
		    f^{ghost}_i = f^{bulk}_{\tilde i} + 2 \frac{\vec v \dot c_i}{c^2_s}
		 \f]

	*/
	class BCConstantVelocity: public BCLBGKCommon
	{	
		protected:
			acl::VectorOfElements velocity;
		public:
			BCConstantVelocity(SPLBGK nm, const acl::VectorOfElements & v);
			virtual void init();			
	};

	/// Bondary condition corresponding wall with given velocity for uncompressible
	/**	 
		 \ingroup TransportProcessesBC

		 velocity value is valid for both tagential and normal components.
 		 \f[ \vec v =\vec v_0,\; \nabla P = P_0 \f]		 

	*/
	class BCConstantPressureVelocity: public BCLBGKCommon
	{	
		protected:
			acl::VectorOfElements pressure;
			acl::VectorOfElements velocity;
		public:
			BCConstantPressureVelocity(SPLBGK nm,
			                           const acl::VectorOfElements & p,
			                           const acl::VectorOfElements & v);
			virtual void init();			
	};

	/// Bondary condition corresponding to a rigid wall (\f$ \vec u=0\f$)
	/**
		\f[ \vec v =0,\; \nabla P = 0 \f] 
	*/

	class BCNoSlipMap:public BCondWithMap
	{		
		protected:
			std::unique_ptr<acl::Kernel> kernel;
			SPLBGK num;
		public:
			BCNoSlipMap(SPLBGK nm, SPAbstractDataWithGhostNodes map);
			~BCNoSlipMap();			
			virtual void execute();
			virtual void init();			
	};

	///
	/**
		 \ingroup TransportProcessesBC
	 */
	class BCVelocityMap:public BCondWithMap
	{		
		protected:
			std::unique_ptr<acl::Kernel> kernel;
			SPLBGK num;
			SPPositionFunction velocity;
			
		public:
			BCVelocityMap(SPLBGK nm, 
			              SPPositionFunction v, 
			              SPAbstractDataWithGhostNodes map);
			BCVelocityMap(SPLBGK nm, 
			              SPPositionFunction v, 
			              SPAbstractDataWithGhostNodes map,
			              SPAbstractDataWithGhostNodes computationalDomain);
			~BCVelocityMap();			
			virtual void execute();
			virtual void init();			
	};

	/**
		\ingroup TransportProcessesBC
	 */	 
	class BCConstantPressureVelocityMap:public BCondWithMap
	{		
		protected:
			std::unique_ptr<acl::Kernel> kernel;
			SPLBGK num;
			acl::VectorOfElements pressure;
			acl::VectorOfElements velocity;
		public:
			BCConstantPressureVelocityMap(SPLBGK nm, 
			          	          acl::VectorOfElements p, 
			                      SPAbstractDataWithGhostNodes map);
			BCConstantPressureVelocityMap(SPLBGK nm, 
			          	          acl::VectorOfElements p,
			                      acl::VectorOfElements v,
			                      SPAbstractDataWithGhostNodes map);
			~BCConstantPressureVelocityMap();			
			virtual void execute();
			virtual void init();			
	};

	/// Set outflux corresponding to transport limitation of the deposition rate
	/**
		 \ingroup TransportProcessesBC
		 
		 \f[ J_{dep}−J_{subl}=\frac{J_{dep}−P_0\alpha}{1+\alpha F, \f]
		 where \f$\alpha \equiv \sum_{i\in \Omega} w_i\f$,  \f$ F \f$ is the limiting factor

	*/
	class BCTransportLimitedDepositionMap:public BCondWithMap
	{		
		protected:
			std::unique_ptr<acl::Kernel> kernel;
			SPLBGK num;
			acl::VectorOfElements p0;
			acl::VectorOfElements limitingFactor;
		public:
			BCTransportLimitedDepositionMap(SPLBGK nm, 
			                                acl::VectorOfElements p,
			                                acl::VectorOfElements lF,
			                                SPAbstractDataWithGhostNodes map);
			~BCTransportLimitedDepositionMap();			
			virtual void execute();
			virtual void init();			
	};

	/// Set outflux corresponding to kinetics and transport limitations of the deposition rate
	/**
		 \ingroup TransportProcessesBC
		 \f[ J_{dep}−J_{subl}=\beta\frac{\rho−\rho_0}{1+ F}, \f]
		 where \f$\alpha \equiv \sum_{i\in \Omega} w_i\f$,  \f$ F \f$ is the limiting factor

	*/
	class BCKineticsLimitedDepositionMap:public BCondWithMap
	{		
		protected:
			std::unique_ptr<acl::Kernel> kernel;
			SPLBGK num;
			acl::VectorOfElements p0;
			acl::VectorOfElements limitingFactor;
			acl::VectorOfElements beta;
		public:
			BCKineticsLimitedDepositionMap(SPLBGK nm, 
			                                acl::VectorOfElements p,
			                                acl::VectorOfElements lF,
			                                acl::VectorOfElements b,
			                                SPAbstractDataWithGhostNodes map);
			~BCKineticsLimitedDepositionMap();			
			virtual void execute();
			virtual void init();			
	};
	
	/**
	 	 \ingroup TransportProcessesBC

	 */
	class ComputeSurfaceFluxMap:public BCondWithMap
	{		
		protected:
			std::unique_ptr<acl::Kernel> kernel;
			SPLBGK num;
			SPDataWithGhostNodesACLData fluxField;
		public:
			ComputeSurfaceFluxMap(SPLBGK nm,
			                        SPDataWithGhostNodesACLData fF,
			                        SPAbstractDataWithGhostNodes map);
			~ComputeSurfaceFluxMap();			
			virtual void execute();
			virtual void init();			
	};

	/**
		 \ingroup TransportProcessesBC
	 */
	class ComputeSurfaceForceMap:public BCondWithMap
	{		
		protected:
			std::unique_ptr<acl::Kernel> kernel;
			SPLBGK num;
			SPDataWithGhostNodesACLData forceField;
		public:
			ComputeSurfaceForceMap(SPLBGK nm,
			                        SPDataWithGhostNodesACLData fF,
			                        SPAbstractDataWithGhostNodes map);
			~ComputeSurfaceForceMap();			
			virtual void execute();
			virtual void init();			
	};

	///	\f[ \vec v =0,\; \nabla P = 0 \f] \ingroup TransportProcessesBC  
	SPBCond generateBCNoSlip(SPLBGK nm, const std::vector<SlicesNames> & sl);	
	///	\f[ \vec v =\vec v_0,\; \nabla P = 0 \f] \ingroup TransportProcessesBC 
	SPBCond generateBCConstantVelocity(SPLBGK nm, AVec<> v, const std::vector<SlicesNames> & sl);	
	///	\f[ \vec v =0,\; P = Const \f] \ingroup TransportProcessesBC 
	SPBCond generateBCConstantPressure(SPLBGK nm, double p, const std::vector<SlicesNames> & sl);	
	///	\f[ \vec v =\vec v_0,\; P = P_0 \f] \ingroup TransportProcessesBC
	SPBCond generateBCConstantPressureVelocity(SPLBGK nm, 
	                                   double p,
	                                   AVec<> v,
	                                   const std::vector<SlicesNames> & sl);	
	///	\f[ \vec v = 0,\; P = Const \f] \ingroup TransportProcessesBC 
	SPNumMethod generateBCConstantPressure(SPLBGK nm, double p, SPAbstractDataWithGhostNodes map);	
	///	\f[ \vec v =\vec v_0,\; P = P_0 \f] \ingroup TransportProcessesBC 
	SPNumMethod generateBCConstantPressureVelocity(SPLBGK nm, 
	                                               double p,
	                                               AVec<> v,            
	                                               SPAbstractDataWithGhostNodes map);	
	///	\f[ \vec v =0,\; \nabla P = 0 \f] \ingroup TransportProcessesBC 
	SPNumMethod generateBCNoSlip(SPLBGK nm, SPAbstractDataWithGhostNodes map);
	///	\f[ \vec v =0 \f] for velocity field \ingroup TransportProcessesBC 
	SPNumMethod generateBCNoSlipVel(SPLBGK nmU, SPAbstractDataWithGhostNodes map);
	///	\f[ \nabla P = 0 \f] \ingroup TransportProcessesBC 
	SPNumMethod generateBCNoSlipRho(SPLBGK nmU, SPAbstractDataWithGhostNodes map);
	///	\f[ \vec v =\vec v_0,\; \nabla P = 0 \f]  \ingroup TransportProcessesBC 
	SPNumMethod generateBCVelocity(SPLBGK nm, 
	                               SPPositionFunction v, 
	                               SPAbstractDataWithGhostNodes map);	
	///	\f[ \vec v =\vec v_0,\; \nabla P = 0 \f] \ingroup TransportProcessesBC 
	SPNumMethod generateBCVelocity(SPLBGK nm, 
	                               SPPositionFunction v, 
	                               SPAbstractDataWithGhostNodes map,
	                               SPAbstractDataWithGhostNodes computationalDomain);	
	///	\f[ \vec v =\vec v_0,\; \nabla P = 0 \f] \ingroup TransportProcessesBC 
	SPNumMethod generateBCVelocityVel(SPLBGK nm, 
	                                  SPPositionFunction v, 
	                                  SPAbstractDataWithGhostNodes map);
	///	\ingroup TransportProcessesBC 
	SPNumMethod generateBCTransportLimitedDeposition(SPLBGK nm, 
	                                                 double p0,
	                                                 double limitingFactor,            
	                                                 SPAbstractDataWithGhostNodes map);	
	///	\ingroup TransportProcessesBC 
	SPNumMethod generateBCKineticsLimitedDeposition(SPLBGK nm, 
	                                                double beta,
	                                                double p0,
	                                                double limitingFactor,            
	                                                SPAbstractDataWithGhostNodes map);	
	///	\ingroup TransportProcessesBC 
	SPNumMethod generateComputeSurfaceFlux(SPLBGK nm, 
	                                       SPDataWithGhostNodesACLData fF, 
	                                       SPAbstractDataWithGhostNodes map);	

	///	\ingroup TransportProcessesBC 
	SPNumMethod generateComputeSurfaceForce(SPLBGK nm, 
	                                       SPDataWithGhostNodesACLData fF, 
	                                       SPAbstractDataWithGhostNodes map);	
	
} //asl

#endif //ASLBGKBC_H