This file is indexed.

/usr/include/deal.II/lac/precondition.h is in libdeal.ii-dev 8.4.2-2+b1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

   1
   2
   3
   4
   5
   6
   7
   8
   9
  10
  11
  12
  13
  14
  15
  16
  17
  18
  19
  20
  21
  22
  23
  24
  25
  26
  27
  28
  29
  30
  31
  32
  33
  34
  35
  36
  37
  38
  39
  40
  41
  42
  43
  44
  45
  46
  47
  48
  49
  50
  51
  52
  53
  54
  55
  56
  57
  58
  59
  60
  61
  62
  63
  64
  65
  66
  67
  68
  69
  70
  71
  72
  73
  74
  75
  76
  77
  78
  79
  80
  81
  82
  83
  84
  85
  86
  87
  88
  89
  90
  91
  92
  93
  94
  95
  96
  97
  98
  99
 100
 101
 102
 103
 104
 105
 106
 107
 108
 109
 110
 111
 112
 113
 114
 115
 116
 117
 118
 119
 120
 121
 122
 123
 124
 125
 126
 127
 128
 129
 130
 131
 132
 133
 134
 135
 136
 137
 138
 139
 140
 141
 142
 143
 144
 145
 146
 147
 148
 149
 150
 151
 152
 153
 154
 155
 156
 157
 158
 159
 160
 161
 162
 163
 164
 165
 166
 167
 168
 169
 170
 171
 172
 173
 174
 175
 176
 177
 178
 179
 180
 181
 182
 183
 184
 185
 186
 187
 188
 189
 190
 191
 192
 193
 194
 195
 196
 197
 198
 199
 200
 201
 202
 203
 204
 205
 206
 207
 208
 209
 210
 211
 212
 213
 214
 215
 216
 217
 218
 219
 220
 221
 222
 223
 224
 225
 226
 227
 228
 229
 230
 231
 232
 233
 234
 235
 236
 237
 238
 239
 240
 241
 242
 243
 244
 245
 246
 247
 248
 249
 250
 251
 252
 253
 254
 255
 256
 257
 258
 259
 260
 261
 262
 263
 264
 265
 266
 267
 268
 269
 270
 271
 272
 273
 274
 275
 276
 277
 278
 279
 280
 281
 282
 283
 284
 285
 286
 287
 288
 289
 290
 291
 292
 293
 294
 295
 296
 297
 298
 299
 300
 301
 302
 303
 304
 305
 306
 307
 308
 309
 310
 311
 312
 313
 314
 315
 316
 317
 318
 319
 320
 321
 322
 323
 324
 325
 326
 327
 328
 329
 330
 331
 332
 333
 334
 335
 336
 337
 338
 339
 340
 341
 342
 343
 344
 345
 346
 347
 348
 349
 350
 351
 352
 353
 354
 355
 356
 357
 358
 359
 360
 361
 362
 363
 364
 365
 366
 367
 368
 369
 370
 371
 372
 373
 374
 375
 376
 377
 378
 379
 380
 381
 382
 383
 384
 385
 386
 387
 388
 389
 390
 391
 392
 393
 394
 395
 396
 397
 398
 399
 400
 401
 402
 403
 404
 405
 406
 407
 408
 409
 410
 411
 412
 413
 414
 415
 416
 417
 418
 419
 420
 421
 422
 423
 424
 425
 426
 427
 428
 429
 430
 431
 432
 433
 434
 435
 436
 437
 438
 439
 440
 441
 442
 443
 444
 445
 446
 447
 448
 449
 450
 451
 452
 453
 454
 455
 456
 457
 458
 459
 460
 461
 462
 463
 464
 465
 466
 467
 468
 469
 470
 471
 472
 473
 474
 475
 476
 477
 478
 479
 480
 481
 482
 483
 484
 485
 486
 487
 488
 489
 490
 491
 492
 493
 494
 495
 496
 497
 498
 499
 500
 501
 502
 503
 504
 505
 506
 507
 508
 509
 510
 511
 512
 513
 514
 515
 516
 517
 518
 519
 520
 521
 522
 523
 524
 525
 526
 527
 528
 529
 530
 531
 532
 533
 534
 535
 536
 537
 538
 539
 540
 541
 542
 543
 544
 545
 546
 547
 548
 549
 550
 551
 552
 553
 554
 555
 556
 557
 558
 559
 560
 561
 562
 563
 564
 565
 566
 567
 568
 569
 570
 571
 572
 573
 574
 575
 576
 577
 578
 579
 580
 581
 582
 583
 584
 585
 586
 587
 588
 589
 590
 591
 592
 593
 594
 595
 596
 597
 598
 599
 600
 601
 602
 603
 604
 605
 606
 607
 608
 609
 610
 611
 612
 613
 614
 615
 616
 617
 618
 619
 620
 621
 622
 623
 624
 625
 626
 627
 628
 629
 630
 631
 632
 633
 634
 635
 636
 637
 638
 639
 640
 641
 642
 643
 644
 645
 646
 647
 648
 649
 650
 651
 652
 653
 654
 655
 656
 657
 658
 659
 660
 661
 662
 663
 664
 665
 666
 667
 668
 669
 670
 671
 672
 673
 674
 675
 676
 677
 678
 679
 680
 681
 682
 683
 684
 685
 686
 687
 688
 689
 690
 691
 692
 693
 694
 695
 696
 697
 698
 699
 700
 701
 702
 703
 704
 705
 706
 707
 708
 709
 710
 711
 712
 713
 714
 715
 716
 717
 718
 719
 720
 721
 722
 723
 724
 725
 726
 727
 728
 729
 730
 731
 732
 733
 734
 735
 736
 737
 738
 739
 740
 741
 742
 743
 744
 745
 746
 747
 748
 749
 750
 751
 752
 753
 754
 755
 756
 757
 758
 759
 760
 761
 762
 763
 764
 765
 766
 767
 768
 769
 770
 771
 772
 773
 774
 775
 776
 777
 778
 779
 780
 781
 782
 783
 784
 785
 786
 787
 788
 789
 790
 791
 792
 793
 794
 795
 796
 797
 798
 799
 800
 801
 802
 803
 804
 805
 806
 807
 808
 809
 810
 811
 812
 813
 814
 815
 816
 817
 818
 819
 820
 821
 822
 823
 824
 825
 826
 827
 828
 829
 830
 831
 832
 833
 834
 835
 836
 837
 838
 839
 840
 841
 842
 843
 844
 845
 846
 847
 848
 849
 850
 851
 852
 853
 854
 855
 856
 857
 858
 859
 860
 861
 862
 863
 864
 865
 866
 867
 868
 869
 870
 871
 872
 873
 874
 875
 876
 877
 878
 879
 880
 881
 882
 883
 884
 885
 886
 887
 888
 889
 890
 891
 892
 893
 894
 895
 896
 897
 898
 899
 900
 901
 902
 903
 904
 905
 906
 907
 908
 909
 910
 911
 912
 913
 914
 915
 916
 917
 918
 919
 920
 921
 922
 923
 924
 925
 926
 927
 928
 929
 930
 931
 932
 933
 934
 935
 936
 937
 938
 939
 940
 941
 942
 943
 944
 945
 946
 947
 948
 949
 950
 951
 952
 953
 954
 955
 956
 957
 958
 959
 960
 961
 962
 963
 964
 965
 966
 967
 968
 969
 970
 971
 972
 973
 974
 975
 976
 977
 978
 979
 980
 981
 982
 983
 984
 985
 986
 987
 988
 989
 990
 991
 992
 993
 994
 995
 996
 997
 998
 999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
// ---------------------------------------------------------------------
//
// Copyright (C) 1999 - 2016 by the deal.II authors
//
// This file is part of the deal.II library.
//
// The deal.II library is free software; you can use it, redistribute
// it, and/or modify it under the terms of the GNU Lesser General
// Public License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
// The full text of the license can be found in the file LICENSE at
// the top level of the deal.II distribution.
//
// ---------------------------------------------------------------------

#ifndef dealii__precondition_h
#define dealii__precondition_h

// This file contains simple preconditioners.

#include <deal.II/base/config.h>
#include <deal.II/base/smartpointer.h>
#include <deal.II/base/utilities.h>
#include <deal.II/base/parallel.h>
#include <deal.II/base/template_constraints.h>
#include <deal.II/lac/tridiagonal_matrix.h>
#include <deal.II/lac/solver_cg.h>
#include <deal.II/lac/vector_memory.h>

DEAL_II_NAMESPACE_OPEN

// forward declarations

template <typename number> class Vector;
template <typename number> class SparseMatrix;
namespace parallel
{
  namespace distributed
  {
    template <typename number> class Vector;
  }
}



/*! @addtogroup Preconditioners
 *@{
 */


/**
 * No preconditioning.  This class helps you, if you want to use a linear
 * solver without preconditioning. All solvers in LAC require a
 * preconditioner. Therefore, you must use the identity provided here to avoid
 * preconditioning. It can be used in the following way:
 *
 * @code
 * SolverControl           solver_control (1000, 1e-12);
 * SolverCG<>              cg (solver_control);
 * cg.solve (system_matrix, solution, system_rhs,
 *          PreconditionIdentity());
 * @endcode
 *
 * See the step-3 tutorial program for an example and additional explanations.
 *
 * Alternatively, the IdentityMatrix class can be used to precondition in this
 * way.
 *
 * @author Guido Kanschat, 1999; extension for full compatibility with
 * LinearOperator class: Jean-Paul Pelteret, 2015
 */
class PreconditionIdentity : public Subscriptor
{
public:
  /**
   * Declare type for container size.
   */
  typedef types::global_dof_index size_type;

  /**
   * This function is only present to provide the interface of a
   * preconditioner to be handed to a smoother.  This does nothing.
   */
  struct AdditionalData
  {
    /**
     * Constructor.
     */
    AdditionalData () {}
  };

  /**
   * Constructor, sets the domain and range sizes to their defaults.
   */
  PreconditionIdentity();

  /**
   * The matrix argument is ignored and here just for compatibility with more
   * complex preconditioners.
   */
  template <typename MatrixType>
  void initialize (const MatrixType     &matrix,
                   const AdditionalData &additional_data = AdditionalData());

  /**
   * Apply preconditioner.
   */
  template<class VectorType>
  void vmult (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner. Since this is the identity, this function
   * is the same as vmult().
   */
  template<class VectorType>
  void Tvmult (VectorType &, const VectorType &) const;

  /**
   * Apply preconditioner, adding to the previous value.
   */
  template<class VectorType>
  void vmult_add (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner, adding. Since this is the identity, this
   * function is the same as vmult_add().
   */
  template<class VectorType>
  void Tvmult_add (VectorType &, const VectorType &) const;

  /**
   * This function is only present to provide the interface of a
   * preconditioner to be handed to a smoother.  This does nothing.
   */
  void clear () {}

  /**
   * Return the dimension of the codomain (or range) space. To remember: the
   * matrix is of dimension $m \times n$.
   *
   * @note This function should only be called if the preconditioner has been
   * initialized.
   */
  size_type m () const;

  /**
   * Return the dimension of the domain space. To remember: the matrix is of
   * dimension $m \times n$.
   *
   * @note This function should only be called if the preconditioner has been
   * initialized.
   */
  size_type n () const;

private:
  /**
   * The dimension of the range space.
   */
  size_type n_rows;

  /**
   * The dimension of the domain space.
   */
  size_type n_columns;
};



/**
 * Preconditioning with Richardson's method. This preconditioner just scales
 * the vector with a constant relaxation factor provided by the AdditionalData
 * object.
 *
 * In Krylov-space methods, this preconditioner should not have any effect.
 * Using SolverRichardson, the two relaxation parameters will be just
 * multiplied. Still, this class is useful in multigrid smoother objects
 * (MGSmootherRelaxation).
 *
 * @author Guido Kanschat, 2005; extension for full compatibility with
 * LinearOperator class: Jean-Paul Pelteret, 2015
 */
class PreconditionRichardson : public Subscriptor
{
public:
  /**
   * Declare type for container size.
   */
  typedef types::global_dof_index size_type;

  /**
   * Parameters for Richardson preconditioner.
   */
  class AdditionalData
  {
  public:
    /**
     * Constructor. Block size must be given since there is no reasonable
     * default parameter.
     */
    AdditionalData (const double relaxation = 1.);

    /**
     * Relaxation parameter.
     */
    double relaxation;
  };

  /**
   * Constructor, sets the relaxation parameter, domain and range sizes to
   * their default.
   */
  PreconditionRichardson();

  /**
   * Change the relaxation parameter.
   */
  void initialize (const AdditionalData &parameters);

  /**
   * Change the relaxation parameter in a way consistent with other
   * preconditioners. The matrix argument is ignored and here just for
   * compatibility with more complex preconditioners.
   */
  template <typename MatrixType>
  void initialize (const MatrixType     &matrix,
                   const AdditionalData &parameters);

  /**
   * Apply preconditioner.
   */
  template<class VectorType>
  void vmult (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner. Since this is the identity, this function
   * is the same as vmult().
   */
  template<class VectorType>
  void Tvmult (VectorType &, const VectorType &) const;
  /**
   * Apply preconditioner, adding to the previous value.
   */
  template<class VectorType>
  void vmult_add (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner, adding. Since this is the identity, this
   * function is the same as vmult_add().
   */
  template<class VectorType>
  void Tvmult_add (VectorType &, const VectorType &) const;

  /**
   * This function is only present to provide the interface of a
   * preconditioner to be handed to a smoother.  This does nothing.
   */
  void clear () {}

  /**
   * Return the dimension of the codomain (or range) space. To remember: the
   * matrix is of dimension $m \times n$.
   *
   * @note This function should only be called if the preconditioner has been
   * initialized.
   */
  size_type m () const;

  /**
   * Return the dimension of the domain space. To remember: the matrix is of
   * dimension $m \times n$.
   *
   * @note This function should only be called if the preconditioner has been
   * initialized.
   */
  size_type n () const;

private:
  /**
   * The relaxation parameter multiplied with the vectors.
   */
  double relaxation;

  /**
   * The dimension of the range space.
   */
  size_type n_rows;

  /**
   * The dimension of the domain space.
   */
  size_type n_columns;
};



/**
 * Preconditioner using a matrix-builtin function.  This class forms a
 * preconditioner suitable for the LAC solver classes. Since many
 * preconditioning methods are based on matrix entries, these have to be
 * implemented as member functions of the underlying matrix implementation.
 * This class now is intended to allow easy access to these member functions
 * from LAC solver classes.
 *
 * It seems that all builtin preconditioners have a relaxation parameter, so
 * please use PreconditionRelaxation for these.
 *
 * You will usually not want to create a named object of this type, although
 * possible. The most common use is like this:
 * @code
 *    SolverGMRES<SparseMatrix<double>,
 *                Vector<double> >      gmres(control,memory,500);
 *
 *    gmres.solve (matrix, solution, right_hand_side,
 *                 PreconditionUseMatrix<SparseMatrix<double>,Vector<double> >
 *                 (matrix,&SparseMatrix<double>::template precondition_Jacobi<double>));
 * @endcode
 * This creates an unnamed object to be passed as the fourth parameter to the
 * solver function of the SolverGMRES class. It assumes that the SparseMatrix
 * class has a function <tt>precondition_Jacobi</tt> taking two vectors
 * (source and destination) as parameters (Actually, there is no function like
 * that, the existing function takes a third parameter, denoting the
 * relaxation parameter; this example is therefore only meant to illustrate
 * the general idea).
 *
 * Note that due to the default template parameters, the above example could
 * be written shorter as follows:
 * @code
 *    ...
 *    gmres.solve (matrix, solution, right_hand_side,
 *                 PreconditionUseMatrix<>
 *                   (matrix,&SparseMatrix<double>::template precondition_Jacobi<double>));
 * @endcode
 *
 * @author Guido Kanschat, Wolfgang Bangerth, 1999
 */
template<typename MatrixType = SparseMatrix<double>, class VectorType = Vector<double> >
class PreconditionUseMatrix : public Subscriptor
{
public:
  /**
   * Type of the preconditioning function of the matrix.
   */
  typedef void ( MatrixType::* function_ptr)(VectorType &, const VectorType &) const;

  /**
   * Constructor.  This constructor stores a reference to the matrix object
   * for later use and selects a preconditioning method, which must be a
   * member function of that matrix.
   */
  PreconditionUseMatrix(const MatrixType  &M,
                        const function_ptr method);

  /**
   * Execute preconditioning. Calls the function passed to the constructor of
   * this object with the two arguments given here.
   */
  void vmult (VectorType       &dst,
              const VectorType &src) const;

private:
  /**
   * Pointer to the matrix in use.
   */
  const MatrixType &matrix;

  /**
   * Pointer to the preconditioning function.
   */
  const function_ptr precondition;
};



/**
 * Base class for other preconditioners. Here, only some common features
 * Jacobi, SOR and SSOR preconditioners are implemented. For preconditioning,
 * refer to derived classes.
 *
 * @author Guido Kanschat, 2000; extension for full compatibility with
 * LinearOperator class: Jean-Paul Pelteret, 2015
 */
template<typename MatrixType = SparseMatrix<double> >
class PreconditionRelaxation : public Subscriptor
{
public:
  /**
   * Declare type for container size.
   */
  typedef typename MatrixType::size_type size_type;

  /**
   * Class for parameters.
   */
  class AdditionalData
  {
  public:
    /**
     * Constructor.
     */
    AdditionalData (const double relaxation = 1.);

    /**
     * Relaxation parameter.
     */
    double relaxation;
  };

  /**
   * Initialize matrix and relaxation parameter. The matrix is just stored in
   * the preconditioner object. The relaxation parameter should be larger than
   * zero and smaller than 2 for numerical reasons. It defaults to 1.
   */
  void initialize (const MatrixType     &A,
                   const AdditionalData &parameters = AdditionalData());

  /**
   * Release the matrix and reset its pointer.
   */
  void clear();

  /**
   * Return the dimension of the codomain (or range) space. To remember: the
   * matrix is of dimension $m \times n$.
   */
  size_type m () const;

  /**
   * Return the dimension of the domain space. To remember: the matrix is of
   * dimension $m \times n$.
   */
  size_type n () const;

protected:
  /**
   * Pointer to the matrix object.
   */
  SmartPointer<const MatrixType, PreconditionRelaxation<MatrixType> > A;

  /**
   * Relaxation parameter.
   */
  double relaxation;
};



/**
 * Jacobi preconditioner using matrix built-in function.  The
 * <tt>MatrixType</tt> class used is required to have a function
 * <tt>precondition_Jacobi(VectorType&, const VectorType&, double</tt>). This
 * class satisfies the
 * @ref ConceptRelaxationType "relaxation concept".
 *
 * @code
 *     // Declare related objects
 *
 * SparseMatrix<double> A;
 * Vector<double> x;
 * Vector<double> b;
 * SolverCG<> solver(...);
 *
 * //...initialize and build A
 *
 *     // Define and initialize preconditioner
 *
 * PreconditionJacobi<SparseMatrix<double> > precondition;
 * precondition.initialize (A, .6);
 *
 * solver.solve (A, x, b, precondition);
 * @endcode
 *
 * @author Guido Kanschat, 2000
 */
template <typename MatrixType = SparseMatrix<double> >
class PreconditionJacobi : public PreconditionRelaxation<MatrixType>
{
public:
  /**
   * Apply preconditioner.
   */
  template<class VectorType>
  void vmult (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner. Since this is a symmetric preconditioner,
   * this function is the same as vmult().
   */
  template<class VectorType>
  void Tvmult (VectorType &, const VectorType &) const;

  /**
   * Perform one step of the preconditioned Richardson iteration.
   */
  template<class VectorType>
  void step (VectorType &x, const VectorType &rhs) const;

  /**
   * Perform one transposed step of the preconditioned Richardson iteration.
   */
  template<class VectorType>
  void Tstep (VectorType &x, const VectorType &rhs) const;
};


/**
 * SOR preconditioner using matrix built-in function.
 *
 * Assuming the matrix <i>A = D + L + U</i> is split into its diagonal
 * <i>D</i> as well as the strict lower and upper triangles <i>L</i> and
 * <i>U</i>, then the SOR preconditioner with relaxation parameter <i>r</i> is
 * @f[
 *  P^{-1} = r (D+rL)^{-1}.
 * @f]
 * It is this operator <i>P<sup>-1</sup></i>, which is implemented by vmult()
 * through forward substitution. Analogously, Tvmult() implements the
 * operation of <i>r(D+rU)<sup>-1</sup></i>.
 *
 * The SOR iteration itself can be directly written as
 * @f[
 *  x^{k+1} = x^k - r D^{-1} \bigl(L x^{k+1} + U x^k - b\bigr).
 * @f]
 * Using the right hand side <i>b</i> and the previous iterate <i>x</i>, this
 * is the operation implemented by step().
 *
 * The MatrixType class used is required to have functions
 * <tt>precondition_SOR(VectorType&, const VectorType&, double)</tt> and
 * <tt>precondition_TSOR(VectorType&, const VectorType&, double)</tt>. This
 * class satisfies the
 * @ref ConceptRelaxationType "relaxation concept".
 *
 * @code
 *     // Declare related objects
 *
 * SparseMatrix<double> A;
 * Vector<double> x;
 * Vector<double> b;
 * SolverCG<> solver(...);
 *
 * //...initialize and build A
 *
 *     // Define and initialize preconditioner
 *
 * PreconditionSOR<SparseMatrix<double> > precondition;
 * precondition.initialize (A, .6);
 *
 * solver.solve (A, x, b, precondition);
 * @endcode
 *
 * @author Guido Kanschat, 2000
 */
template <typename MatrixType = SparseMatrix<double> >
class PreconditionSOR : public PreconditionRelaxation<MatrixType>
{
public:
  /**
   * Apply preconditioner.
   */
  template<class VectorType>
  void vmult (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner.
   */
  template<class VectorType>
  void Tvmult (VectorType &, const VectorType &) const;

  /**
   * Perform one step of the preconditioned Richardson iteration.
   */
  template<class VectorType>
  void step (VectorType &x, const VectorType &rhs) const;

  /**
   * Perform one transposed step of the preconditioned Richardson iteration.
   */
  template<class VectorType>
  void Tstep (VectorType &x, const VectorType &rhs) const;
};



/**
 * SSOR preconditioner using matrix built-in function.  The
 * <tt>MatrixType</tt> class used is required to have a function
 * <tt>precondition_SSOR(VectorType&, const VectorType&, double)</tt>. This
 * class satisfies the
 * @ref ConceptRelaxationType "relaxation concept".
 *
 * @code
 *     // Declare related objects
 *
 * SparseMatrix<double> A;
 * Vector<double> x;
 * Vector<double> b;
 * SolverCG<> solver(...);
 *
 * //...initialize and build A
 *
 *     // Define and initialize preconditioner
 *
 * PreconditionSSOR<SparseMatrix<double> > precondition;
 * precondition.initialize (A, .6);
 *
 * solver.solve (A, x, b, precondition);
 * @endcode
 *
 * @author Guido Kanschat, 2000
 */
template <typename MatrixType = SparseMatrix<double> >
class PreconditionSSOR : public PreconditionRelaxation<MatrixType>
{
public:
  /**
   * Declare type for container size.
   */
  typedef typename MatrixType::size_type size_type;

  /**
   * A typedef to the base class.
   */
  typedef PreconditionRelaxation<MatrixType> BaseClass;


  /**
   * Initialize matrix and relaxation parameter. The matrix is just stored in
   * the preconditioner object. The relaxation parameter should be larger than
   * zero and smaller than 2 for numerical reasons. It defaults to 1.
   */
  void initialize (const MatrixType &A,
                   const typename BaseClass::AdditionalData &parameters = typename BaseClass::AdditionalData());

  /**
   * Apply preconditioner.
   */
  template<class VectorType>
  void vmult (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner. Since this is a symmetric preconditioner,
   * this function is the same as vmult().
   */
  template<class VectorType>
  void Tvmult (VectorType &, const VectorType &) const;


  /**
   * Perform one step of the preconditioned Richardson iteration
   */
  template<class VectorType>
  void step (VectorType &x, const VectorType &rhs) const;

  /**
   * Perform one transposed step of the preconditioned Richardson iteration.
   */
  template<class VectorType>
  void Tstep (VectorType &x, const VectorType &rhs) const;

private:
  /**
   * An array that stores for each matrix row where the first position after
   * the diagonal is located.
   */
  std::vector<std::size_t> pos_right_of_diagonal;
};


/**
 * Permuted SOR preconditioner using matrix built-in function.  The
 * <tt>MatrixType</tt> class used is required to have functions
 * <tt>PSOR(VectorType&, const VectorType&, double)</tt> and
 * <tt>TPSOR(VectorType&, const VectorType&, double)</tt>.
 *
 * @code
 *     // Declare related objects
 *
 * SparseMatrix<double> A;
 * Vector<double> x;
 * Vector<double> b;
 * SolverCG<> solver(...);
 *
 * //...initialize and build A
 *
 * std::vector<unsigned int> permutation(x.size());
 * std::vector<unsigned int> inverse_permutation(x.size());
 *
 * //...fill permutation and its inverse with reasonable values
 *
 *     // Define and initialize preconditioner
 *
 * PreconditionPSOR<SparseMatrix<double> > precondition;
 * precondition.initialize (A, permutation, inverse_permutation, .6);
 *
 * solver.solve (A, x, b, precondition);
 * @endcode
 *
 * @author Guido Kanschat, 2003; extension for full compatibility with
 * LinearOperator class: Jean-Paul Pelteret, 2015
 */
template <typename MatrixType = SparseMatrix<double> >
class PreconditionPSOR : public PreconditionRelaxation<MatrixType>
{
public:
  /**
   * Declare type for container size.
   */
  typedef typename MatrixType::size_type size_type;

  /**
   * Parameters for PreconditionPSOR.
   */
  class AdditionalData
  {
  public:
    /**
     * Constructor. For the parameters' description, see below.
     *
     * The permutation vectors are stored as a reference. Therefore, it has to
     * be assured that the lifetime of the vector exceeds the lifetime of the
     * preconditioner.
     *
     * The relaxation parameter should be larger than zero and smaller than 2
     * for numerical reasons. It defaults to 1.
     */
    AdditionalData (const std::vector<size_type> &permutation,
                    const std::vector<size_type> &inverse_permutation,
                    const typename PreconditionRelaxation<MatrixType>::AdditionalData
                    &parameters = typename PreconditionRelaxation<MatrixType>::AdditionalData());

    /**
     * Storage for the permutation vector.
     */
    const std::vector<size_type> &permutation;
    /**
     * Storage for the inverse permutation vector.
     */
    const std::vector<size_type> &inverse_permutation;
    /**
     * Relaxation parameters
     */
    typename PreconditionRelaxation<MatrixType>::AdditionalData parameters;
  };

  /**
   * Initialize matrix and relaxation parameter. The matrix is just stored in
   * the preconditioner object.
   *
   * The permutation vector is stored as a pointer. Therefore, it has to be
   * assured that the lifetime of the vector exceeds the lifetime of the
   * preconditioner.
   *
   * The relaxation parameter should be larger than zero and smaller than 2
   * for numerical reasons. It defaults to 1.
   */
  void initialize (const MatrixType             &A,
                   const std::vector<size_type> &permutation,
                   const std::vector<size_type> &inverse_permutation,
                   const typename PreconditionRelaxation<MatrixType>::AdditionalData &
                   parameters = typename PreconditionRelaxation<MatrixType>::AdditionalData());

  /**
   * Initialize matrix and relaxation parameter. The matrix is just stored in
   * the preconditioner object.
   *
   * For more detail about possible parameters, see the class documentation
   * and the documentation of the PreconditionPSOR::AdditionalData class.
   *
   * After this function is called the preconditioner is ready to be used
   * (using the <code>vmult</code> function of derived classes).
   */
  void initialize (const MatrixType &A,
                   const AdditionalData &additional_data);

  /**
   * Apply preconditioner.
   */
  template<class VectorType>
  void vmult (VectorType &, const VectorType &) const;

  /**
   * Apply transpose preconditioner.
   */
  template<class VectorType>
  void Tvmult (VectorType &, const VectorType &) const;
private:
  /**
   * Storage for the permutation vector.
   */
  const std::vector<size_type> *permutation;
  /**
   * Storage for the inverse permutation vector.
   */
  const std::vector<size_type> *inverse_permutation;
};



/**
 * Preconditioning with a Chebyshev polynomial for symmetric positive definite
 * matrices. This preconditioner is similar to a Jacobi preconditioner if the
 * degree variable is set to one, otherwise some higher order polynomial
 * corrections are used. This preconditioner needs access to the diagonal of
 * the matrix it acts on and needs a respective <tt>vmult</tt> implementation.
 * However, it does not need to explicitly know the matrix entries.
 *
 * This class is useful e.g. in multigrid smoother objects, since it is
 * trivially %parallel (assuming that matrix-vector products are %parallel).
 *
 * @author Martin Kronbichler, 2009; extension for full compatibility with
 * LinearOperator class: Jean-Paul Pelteret, 2015
 */
template <typename MatrixType=SparseMatrix<double>, class VectorType=Vector<double> >
class PreconditionChebyshev : public Subscriptor
{
public:
  /**
   * Declare type for container size.
   */
  typedef types::global_dof_index size_type;

  /**
   * Standardized data struct to pipe additional parameters to the
   * preconditioner.
   */
  struct AdditionalData
  {
    /**
     * Constructor.
     */
    AdditionalData (const unsigned int degree              = 0,
                    const double       smoothing_range     = 0.,
                    const bool         nonzero_starting    = false,
                    const unsigned int eig_cg_n_iterations = 8,
                    const double       eig_cg_residual     = 1e-2,
                    const double       max_eigenvalue      = 1);

    /**
     * This determines the degree of the Chebyshev polynomial. The degree of
     * the polynomial gives the number of matrix-vector products to be
     * performed for one application of the vmult() operation. Degree zero
     * corresponds to a damped Jacobi method.
     */
    unsigned int degree;

    /**
     * This sets the range between the largest eigenvalue in the matrix and
     * the smallest eigenvalue to be treated. If the parameter is zero, an
     * estimate for the largest and for the smallest eigenvalue will be
     * calculated internally. Otherwise, the Chebyshev polynomial will act in
     * the interval $[\lambda_\mathrm{max}/ \tt{smoothing\_range},
     * \lambda_\mathrm{max}]$, where $\lambda_\mathrm{max}$ is an estimate of
     * the maximum eigenvalue of the matrix. A choice of
     * <tt>smoothing_range</tt> between 5 and 20 is useful in case the
     * preconditioner is used as a smoother in multigrid.
     */
    double smoothing_range;

    /**
     * When this flag is set to <tt>true</tt>, it enables the method
     * <tt>vmult(dst, src)</tt> to use non-zero data in the vector
     * <tt>dst</tt>, appending to it the Chebyshev corrections. This can be
     * useful in some situations (e.g. when used for high-frequency error
     * smoothing in a multigrid algorithm), but not the way the solver classes
     * expect a preconditioner to work (where one ignores the content in
     * <tt>dst</tt> for the preconditioner application).
     */
    bool nonzero_starting;

    /**
     * Maximum number of CG iterations performed for finding the maximum
     * eigenvalue. If set to zero, no computations are performed and the
     * eigenvalues according to the given input are used instead.
     */
    unsigned int eig_cg_n_iterations;

    /**
     * Tolerance for CG iterations performed for finding the maximum
     * eigenvalue.
     */
    double eig_cg_residual;

    /**
     * Maximum eigenvalue to work with. Only in effect if @p
     * eig_cg_n_iterations is set to zero, otherwise this parameter is
     * ignored.
     */
    double max_eigenvalue;

    /**
     * Stores the inverse of the diagonal of the underlying matrix.
     */
    VectorType matrix_diagonal_inverse;
  };

  PreconditionChebyshev ();

  /**
   * Initialize function. Takes the matrix which is used to form the
   * preconditioner, and additional flags if there are any. This function
   * works only if the input matrix has an operator <tt>el(i,i)</tt> for
   * accessing all the elements in the diagonal. Alternatively, the diagonal
   * can be supplied with the help of the AdditionalData field.
   *
   * This function calculates an estimate of the eigenvalue range of the
   * matrix weighted by its diagonal using a modified CG iteration in case the
   * given number of iterations is positive.
   */
  void initialize (const MatrixType     &matrix,
                   const AdditionalData &additional_data = AdditionalData());

  /**
   * Computes the action of the preconditioner on <tt>src</tt>, storing the
   * result in <tt>dst</tt>.
   */
  void vmult (VectorType       &dst,
              const VectorType &src) const;

  /**
   * Computes the action of the transposed preconditioner on <tt>src</tt>,
   * storing the result in <tt>dst</tt>.
   */
  void Tvmult (VectorType       &dst,
               const VectorType &src) const;

  /**
   * Resets the preconditioner.
   */
  void clear ();

  /**
   * Return the dimension of the codomain (or range) space. To remember: the
   * matrix is of dimension $m \times n$.
   */
  size_type m () const;

  /**
   * Return the dimension of the domain space. To remember: the matrix is of
   * dimension $m \times n$.
   */
  size_type n () const;

private:

  /**
   * A pointer to the underlying matrix.
   */
  SmartPointer<const MatrixType,PreconditionChebyshev<MatrixType,VectorType> > matrix_ptr;

  /**
   * Internal vector used for the <tt>vmult</tt> operation.
   */
  mutable VectorType update1;

  /**
   * Internal vector used for the <tt>vmult</tt> operation.
   */
  mutable VectorType update2;

  /**
   * Stores the additional data provided to the initialize function.
   */
  AdditionalData data;

  /**
   * Average of the largest and smallest eigenvalue under consideration.
   */
  double theta;

  /**
   * Half the interval length between the largest and smallest eigenvalue
   * under consideration.
   */
  double delta;

  /**
   * Stores whether the preconditioner has been set up.
   */
  bool is_initialized;
};



/*@}*/
/* ---------------------------------- Inline functions ------------------- */

#ifndef DOXYGEN

inline
PreconditionIdentity::PreconditionIdentity ()
  :
  n_rows (0),
  n_columns (0)
{}

template <typename MatrixType>
inline void
PreconditionIdentity::initialize (const MatrixType &matrix,
                                  const PreconditionIdentity::AdditionalData &)
{
  n_rows = matrix.m();
  n_columns = matrix.n();
}


template<class VectorType>
inline void
PreconditionIdentity::vmult (VectorType &dst, const VectorType &src) const
{
  dst = src;
}



template<class VectorType>
inline void
PreconditionIdentity::Tvmult (VectorType &dst, const VectorType &src) const
{
  dst = src;
}

template<class VectorType>
inline void
PreconditionIdentity::vmult_add (VectorType &dst, const VectorType &src) const
{
  dst.add(src);
}



template<class VectorType>
inline void
PreconditionIdentity::Tvmult_add (VectorType &dst, const VectorType &src) const
{
  dst.add(src);
}

inline PreconditionIdentity::size_type
PreconditionIdentity::m () const
{
  Assert(n_rows != 0, ExcNotInitialized());
  return n_rows;
}

inline PreconditionIdentity::size_type
PreconditionIdentity::n () const
{
  Assert(n_columns != 0, ExcNotInitialized());
  return n_columns;
}

//---------------------------------------------------------------------------

inline
PreconditionRichardson::AdditionalData::AdditionalData (const double relaxation)
  :
  relaxation(relaxation)
{}


inline
PreconditionRichardson::PreconditionRichardson ()
  :
  relaxation(0),
  n_rows (0),
  n_columns (0)
{
  AdditionalData add_data;
  relaxation=add_data.relaxation;
}



inline void
PreconditionRichardson::initialize
(const PreconditionRichardson::AdditionalData &parameters)
{
  relaxation = parameters.relaxation;
}



template <typename MatrixType>
inline void
PreconditionRichardson::initialize
(const MatrixType                             &matrix,
 const PreconditionRichardson::AdditionalData &parameters)
{
  relaxation = parameters.relaxation;
  n_rows = matrix.m();
  n_columns = matrix.n();
}



template<class VectorType>
inline void
PreconditionRichardson::vmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<size_type, typename VectorType::size_type>::value,
    "PreconditionRichardson and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  dst.equ(relaxation,src);
}



template<class VectorType>
inline void
PreconditionRichardson::Tvmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<size_type, typename VectorType::size_type>::value,
    "PreconditionRichardson and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  dst.equ(relaxation,src);
}

template<class VectorType>
inline void
PreconditionRichardson::vmult_add (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<size_type, typename VectorType::size_type>::value,
    "PreconditionRichardson and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  dst.add(relaxation,src);
}



template<class VectorType>
inline void
PreconditionRichardson::Tvmult_add (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<size_type, typename VectorType::size_type>::value,
    "PreconditionRichardson and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  dst.add(relaxation,src);
}

inline PreconditionRichardson::size_type
PreconditionRichardson::m () const
{
  Assert(n_rows != 0, ExcNotInitialized());
  return n_rows;
}

inline PreconditionRichardson::size_type
PreconditionRichardson::n () const
{
  Assert(n_columns != 0, ExcNotInitialized());
  return n_columns;
}

//---------------------------------------------------------------------------

template <typename MatrixType>
inline void
PreconditionRelaxation<MatrixType>::initialize (const MatrixType     &rA,
                                                const AdditionalData &parameters)
{
  A = &rA;
  relaxation = parameters.relaxation;
}


template <typename MatrixType>
inline void
PreconditionRelaxation<MatrixType>::clear ()
{
  A = 0;
}

template <typename MatrixType>
inline typename PreconditionRelaxation<MatrixType>::size_type
PreconditionRelaxation<MatrixType>::m () const
{
  Assert (A!=0, ExcNotInitialized());
  return A->m();
}

template <typename MatrixType>
inline typename PreconditionRelaxation<MatrixType>::size_type
PreconditionRelaxation<MatrixType>::n () const
{
  Assert (A!=0, ExcNotInitialized());
  return A->n();
}

//---------------------------------------------------------------------------

template <typename MatrixType>
template<class VectorType>
inline void
PreconditionJacobi<MatrixType>::vmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionJacobi<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionJacobi and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->precondition_Jacobi (dst, src, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionJacobi<MatrixType>::Tvmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionJacobi<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionJacobi and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->precondition_Jacobi (dst, src, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionJacobi<MatrixType>::step (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionJacobi<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionJacobi and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->Jacobi_step (dst, src, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionJacobi<MatrixType>::Tstep (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionJacobi<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionJacobi and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  step (dst, src);
}



//---------------------------------------------------------------------------

template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSOR<MatrixType>::vmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->precondition_SOR (dst, src, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSOR<MatrixType>::Tvmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->precondition_TSOR (dst, src, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSOR<MatrixType>::step (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->SOR_step (dst, src, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSOR<MatrixType>::Tstep (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->TSOR_step (dst, src, this->relaxation);
}



//---------------------------------------------------------------------------

template <typename MatrixType>
inline void
PreconditionSSOR<MatrixType>::initialize (const MatrixType                     &rA,
                                          const typename BaseClass::AdditionalData &parameters)
{
  this->PreconditionRelaxation<MatrixType>::initialize (rA, parameters);

  // in case we have a SparseMatrix class, we can extract information about
  // the diagonal.
  const SparseMatrix<typename MatrixType::value_type> *mat =
    dynamic_cast<const SparseMatrix<typename MatrixType::value_type> *>(&*this->A);

  // calculate the positions first after the diagonal.
  if (mat != 0)
    {
      const size_type n = this->A->n();
      pos_right_of_diagonal.resize(n, static_cast<std::size_t>(-1));
      for (size_type row=0; row<n; ++row)
        {
          // find the first element in this line which is on the right of the
          // diagonal.  we need to precondition with the elements on the left
          // only. note: the first entry in each line denotes the diagonal
          // element, which we need not check.
          typename SparseMatrix<typename MatrixType::value_type>::const_iterator
          it = mat->begin(row)+1;
          for ( ; it < mat->end(row); ++it)
            if (it->column() > row)
              break;
          pos_right_of_diagonal[row] = it - mat->begin();
        }
    }
}


template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSSOR<MatrixType>::vmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->precondition_SSOR (dst, src, this->relaxation, pos_right_of_diagonal);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSSOR<MatrixType>::Tvmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->precondition_SSOR (dst, src, this->relaxation, pos_right_of_diagonal);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSSOR<MatrixType>::step (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  this->A->SSOR_step (dst, src, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionSSOR<MatrixType>::Tstep (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionSSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionSSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  step (dst, src);
}



//---------------------------------------------------------------------------

template <typename MatrixType>
inline void
PreconditionPSOR<MatrixType>::initialize
(const MatrixType             &rA,
 const std::vector<size_type> &p,
 const std::vector<size_type> &ip,
 const typename PreconditionRelaxation<MatrixType>::AdditionalData &parameters)
{
  permutation = &p;
  inverse_permutation = &ip;
  PreconditionRelaxation<MatrixType>::initialize(rA, parameters);
}


template <typename MatrixType>
inline void
PreconditionPSOR<MatrixType>::initialize (const MatrixType     &A,
                                          const AdditionalData &additional_data)
{
  initialize(A,
             additional_data.permutation,
             additional_data.inverse_permutation,
             additional_data.parameters);
}


template <typename MatrixType>
template <typename VectorType>
inline void
PreconditionPSOR<MatrixType>::vmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionPSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionPSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  dst = src;
  this->A->PSOR (dst, *permutation, *inverse_permutation, this->relaxation);
}



template <typename MatrixType>
template<class VectorType>
inline void
PreconditionPSOR<MatrixType>::Tvmult (VectorType &dst, const VectorType &src) const
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<typename PreconditionPSOR<MatrixType>::size_type, typename VectorType::size_type>::value,
    "PreconditionPSOR and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11

  Assert (this->A!=0, ExcNotInitialized());
  dst = src;
  this->A->TPSOR (dst, *permutation, *inverse_permutation, this->relaxation);
}

template <typename MatrixType>
PreconditionPSOR<MatrixType>::AdditionalData::AdditionalData
(const std::vector<size_type> &permutation,
 const std::vector<size_type> &inverse_permutation,
 const typename PreconditionRelaxation<MatrixType>::AdditionalData &parameters)
  :
  permutation(permutation),
  inverse_permutation(inverse_permutation),
  parameters(parameters)
{

}


//---------------------------------------------------------------------------


template<typename MatrixType, class VectorType>
PreconditionUseMatrix<MatrixType,VectorType>::PreconditionUseMatrix(const MatrixType   &M,
    const function_ptr method)
  :
  matrix(M), precondition(method)
{}



template<typename MatrixType, class VectorType>
void
PreconditionUseMatrix<MatrixType,VectorType>::vmult (VectorType       &dst,
                                                     const VectorType &src) const
{
  (matrix.*precondition)(dst, src);
}

//---------------------------------------------------------------------------

template<typename MatrixType>
inline
PreconditionRelaxation<MatrixType>::AdditionalData::
AdditionalData (const double relaxation)
  :
  relaxation (relaxation)
{}



//---------------------------------------------------------------------------

namespace internal
{
  namespace PreconditionChebyshev
  {
    // for deal.II vectors, perform updates for Chebyshev preconditioner all
    // at once to reduce memory transfer. Here, we select between general
    // vectors and deal.II vectors where we expand the loop over the (local)
    // size of the vector

    // generic part for non-deal.II vectors
    template <typename VectorType>
    inline
    void
    vector_updates (const VectorType &src,
                    const VectorType &matrix_diagonal_inverse,
                    const bool       start_zero,
                    const double     factor1,
                    const double     factor2,
                    VectorType       &update1,
                    VectorType       &update2,
                    VectorType       &dst)
    {
      if (start_zero)
        {
          dst.equ (factor2, src);
          dst.scale (matrix_diagonal_inverse);
          update1.equ(-1.,dst);
        }
      else
        {
          update2 -= src;
          update2.scale (matrix_diagonal_inverse);
          if (factor1 == 0.)
            update1.equ(factor2, update2);
          else
            update1.sadd(factor1, factor2, update2);
          dst -= update1;
        }
    }

    // worker routine for deal.II vectors. Because of vectorization, we need
    // to put the loop into an extra structure because the virtual function of
    // VectorUpdatesRange prevents the compiler from applying vectorization.
    template <typename Number>
    struct VectorUpdater
    {
      VectorUpdater (const Number *src,
                     const Number *matrix_diagonal_inverse,
                     const bool    start_zero,
                     const Number  factor1,
                     const Number  factor2,
                     Number       *update1,
                     Number       *update2,
                     Number       *dst)
        :
        src (src),
        matrix_diagonal_inverse (matrix_diagonal_inverse),
        do_startup (factor1 == Number()),
        start_zero (start_zero),
        factor1 (factor1),
        factor2 (factor2),
        update1 (update1),
        update2 (update2),
        dst (dst)
      {}

      void
      apply_to_subrange (const std::size_t begin,
                         const std::size_t end) const
      {
        // To circumvent a bug in gcc
        // (https://gcc.gnu.org/bugzilla/show_bug.cgi?id=63945), we create copies
        // of the variables factor1 and factor2 and do not check based on
        // factor1.
        const Number factor1 = this->factor1;
        const Number factor2 = this->factor2;
        if (do_startup)
          {
            if (start_zero)
              DEAL_II_OPENMP_SIMD_PRAGMA
              for (std::size_t i=begin; i<end; ++i)
                {
                  dst[i] = factor2 * src[i] * matrix_diagonal_inverse[i];
                  update1[i] = -dst[i];
                }
            else
              DEAL_II_OPENMP_SIMD_PRAGMA
              for (std::size_t i=begin; i<end; ++i)
                {
                  update1[i] = ((update2[i]-src[i]) *
                                factor2*matrix_diagonal_inverse[i]);
                  dst[i] -= update1[i];
                }
          }
        else
          DEAL_II_OPENMP_SIMD_PRAGMA
          for (std::size_t i=begin; i<end; ++i)
            {
              const Number update =
                factor1 * update1[i] + factor2 *
                ((update2[i] - src[i]) * matrix_diagonal_inverse[i]);
              update1[i] = update;
              dst[i] -= update;
            }
      }

      const Number *src;
      const Number *matrix_diagonal_inverse;
      const bool do_startup;
      const bool start_zero;
      const Number factor1;
      const Number factor2;
      mutable Number *update1;
      mutable Number *update2;
      mutable Number *dst;
    };

    template<typename Number>
    struct VectorUpdatesRange : public parallel::ParallelForInteger
    {
      VectorUpdatesRange(const VectorUpdater<Number> &updater,
                         const std::size_t size)
        :
        updater (updater)
      {
        if (size < internal::Vector::minimum_parallel_grain_size)
          apply_to_subrange (0, size);
        else
          apply_parallel (0, size,
                          internal::Vector::minimum_parallel_grain_size);
      }

      ~VectorUpdatesRange() {}

      virtual void
      apply_to_subrange (const std::size_t begin,
                         const std::size_t end) const
      {
        updater.apply_to_subrange(begin, end);
      }

      const VectorUpdater<Number> &updater;
    };

    // selection for deal.II vector
    template <typename Number>
    inline
    void
    vector_updates (const ::dealii::Vector<Number> &src,
                    const ::dealii::Vector<Number> &matrix_diagonal_inverse,
                    const bool    start_zero,
                    const double  factor1,
                    const double  factor2,
                    ::dealii::Vector<Number> &update1,
                    ::dealii::Vector<Number> &update2,
                    ::dealii::Vector<Number> &dst)
    {
      VectorUpdater<Number> upd(src.begin(), matrix_diagonal_inverse.begin(),
                                start_zero, factor1, factor2,
                                update1.begin(), update2.begin(), dst.begin());
      VectorUpdatesRange<Number>(upd, src.size());
    }

    // selection for parallel deal.II vector
    template <typename Number>
    inline
    void
    vector_updates (const parallel::distributed::Vector<Number> &src,
                    const parallel::distributed::Vector<Number> &matrix_diagonal_inverse,
                    const bool    start_zero,
                    const double  factor1,
                    const double  factor2,
                    parallel::distributed::Vector<Number> &update1,
                    parallel::distributed::Vector<Number> &update2,
                    parallel::distributed::Vector<Number> &dst)
    {
      VectorUpdater<Number> upd(src.begin(), matrix_diagonal_inverse.begin(),
                                start_zero, factor1, factor2,
                                update1.begin(), update2.begin(), dst.begin());
      VectorUpdatesRange<Number>(upd, src.local_size());
    }

    template <typename VectorType>
    struct DiagonalPreconditioner
    {
      DiagonalPreconditioner (const VectorType &vector)
        :
        diagonal_vector(vector)
      {}

      void vmult (VectorType       &dst,
                  const VectorType &src) const
      {
        dst = src;
        dst.scale(diagonal_vector);
      }

      const VectorType &diagonal_vector;
    };

    struct EigenvalueTracker
    {
    public:
      void slot(const std::vector<double> &eigenvalues)
      {
        values = eigenvalues;
      }

      std::vector<double> values;
    };
  }
}



template <typename MatrixType, class VectorType>
inline
PreconditionChebyshev<MatrixType,VectorType>::AdditionalData::
AdditionalData (const unsigned int degree,
                const double       smoothing_range,
                const bool         nonzero_starting,
                const unsigned int eig_cg_n_iterations,
                const double       eig_cg_residual,
                const double       max_eigenvalue)
  :
  degree  (degree),
  smoothing_range (smoothing_range),
  nonzero_starting (nonzero_starting),
  eig_cg_n_iterations (eig_cg_n_iterations),
  eig_cg_residual (eig_cg_residual),
  max_eigenvalue (max_eigenvalue)
{}



template <typename MatrixType, class VectorType>
inline
PreconditionChebyshev<MatrixType,VectorType>::PreconditionChebyshev ()
  :
  is_initialized (false)
{
#ifdef DEAL_II_WITH_CXX11
  static_assert(
    std::is_same<size_type, typename VectorType::size_type>::value,
    "PreconditionChebyshev and VectorType must have the same size_type.");
#endif // DEAL_II_WITH_CXX11
}



template <typename MatrixType, class VectorType>
inline
void
PreconditionChebyshev<MatrixType,VectorType>::initialize
(const MatrixType     &matrix,
 const AdditionalData &additional_data)
{
  matrix_ptr = &matrix;
  data = additional_data;
  if (data.matrix_diagonal_inverse.size() != matrix.m())
    {
      Assert(data.matrix_diagonal_inverse.size() == 0,
             ExcMessage("Matrix diagonal vector set but not sized correctly"));
      data.matrix_diagonal_inverse.reinit(matrix.m());
      for (unsigned int i=0; i<matrix.m(); ++i)
        data.matrix_diagonal_inverse(i) = 1./matrix.el(i,i);
    }


  // calculate largest eigenvalue using a hand-tuned CG iteration on the
  // matrix weighted by its diagonal. we start with a vector that consists of
  // ones only, weighted by the length.
  double max_eigenvalue, min_eigenvalue;
  if (data.eig_cg_n_iterations > 0)
    {
      Assert (additional_data.eig_cg_n_iterations > 2,
              ExcMessage ("Need to set at least two iterations to find eigenvalues."));

      // set a very strict tolerance to force at least two iterations
      ReductionControl control (data.eig_cg_n_iterations, 1e-35, 1e-10);
      GrowingVectorMemory<VectorType> memory;
      VectorType *rhs = memory.alloc();
      VectorType *dummy = memory.alloc();
      rhs->reinit(data.matrix_diagonal_inverse);
      dummy->reinit(data.matrix_diagonal_inverse);

      // heuristically, a right hand side close to a constant has been shown
      // to quickly reveal the largest eigenvalue. however, avoid to use the
      // exact constant because that might be not in the range space of some
      // matrices (purely Neumann matrices with constant mode filtered out by
      // orthogonal projection in the matrix-vector product)
      *rhs = 1./std::sqrt(static_cast<double>(matrix.m()));
      if (rhs->locally_owned_elements().is_element(0))
        (*rhs)(0) = 0.;
      rhs->compress(VectorOperation::insert);

      internal::PreconditionChebyshev::EigenvalueTracker eigenvalue_tracker;
      SolverCG<VectorType> solver (control, memory);
      solver.connect_eigenvalues_slot(std_cxx11::bind(&internal::PreconditionChebyshev::EigenvalueTracker::slot,
                                                      &eigenvalue_tracker,
                                                      std_cxx11::_1));
      internal::PreconditionChebyshev::DiagonalPreconditioner<VectorType>
      preconditioner(data.matrix_diagonal_inverse);
      try
        {
          solver.solve(matrix, *dummy, *rhs, preconditioner);
        }
      catch (SolverControl::NoConvergence &)
        {
        }

      memory.free(dummy);
      memory.free(rhs);

      // read the eigenvalues from the attached eigenvalue tracker
      if (eigenvalue_tracker.values.empty())
        min_eigenvalue = max_eigenvalue = 1;
      else
        {
          min_eigenvalue = eigenvalue_tracker.values.front();
          max_eigenvalue = eigenvalue_tracker.values.back();
        }

      // include a safety factor since the CG method will in general not be
      // converged
      max_eigenvalue *= 1.2;
    }
  else
    {
      max_eigenvalue = data.max_eigenvalue;
      min_eigenvalue = data.max_eigenvalue/data.smoothing_range;
    }

  const double alpha = (data.smoothing_range > 1. ?
                        max_eigenvalue / data.smoothing_range :
                        std::min(0.9*max_eigenvalue, min_eigenvalue));
  delta = (max_eigenvalue-alpha)*0.5;
  theta = (max_eigenvalue+alpha)*0.5;

  update1.reinit (data.matrix_diagonal_inverse, true);
  update2.reinit (data.matrix_diagonal_inverse, true);

  is_initialized = true;
}



template <typename MatrixType, class VectorType>
inline
void
PreconditionChebyshev<MatrixType,VectorType>::vmult (VectorType       &dst,
                                                     const VectorType &src) const
{
  Assert (is_initialized, ExcMessage("Preconditioner not initialized"));
  double rhok  = delta / theta,  sigma = theta / delta;
  if (data.nonzero_starting && !dst.all_zero())
    {
      matrix_ptr->vmult (update2, dst);
      internal::PreconditionChebyshev::vector_updates
      (src, data.matrix_diagonal_inverse, false, 0., 1./theta, update1,
       update2, dst);
    }
  else
    internal::PreconditionChebyshev::vector_updates
    (src, data.matrix_diagonal_inverse, true, 0., 1./theta, update1,
     update2, dst);

  for (unsigned int k=0; k<data.degree; ++k)
    {
      matrix_ptr->vmult (update2, dst);
      const double rhokp = 1./(2.*sigma-rhok);
      const double factor1 = rhokp * rhok, factor2 = 2.*rhokp/delta;
      rhok = rhokp;
      internal::PreconditionChebyshev::vector_updates
      (src, data.matrix_diagonal_inverse, false, factor1, factor2, update1,
       update2, dst);
    }
}



template <typename MatrixType, class VectorType>
inline
void
PreconditionChebyshev<MatrixType,VectorType>::Tvmult (VectorType       &dst,
                                                      const VectorType &src) const
{
  Assert (is_initialized, ExcMessage("Preconditioner not initialized"));
  double rhok  = delta / theta,  sigma = theta / delta;
  if (data.nonzero_starting && !dst.all_zero())
    {
      matrix_ptr->Tvmult (update2, dst);
      internal::PreconditionChebyshev::vector_updates
      (src, data.matrix_diagonal_inverse, false, 0., 1./theta, update1,
       update2, dst);
    }
  else
    internal::PreconditionChebyshev::vector_updates
    (src, data.matrix_diagonal_inverse, true, 0., 1./theta, update1,
     update2, dst);

  for (unsigned int k=0; k<data.degree; ++k)
    {
      matrix_ptr->Tvmult (update2, dst);
      const double rhokp = 1./(2.*sigma-rhok);
      const double factor1 = rhokp * rhok, factor2 = 2.*rhokp/delta;
      rhok = rhokp;
      internal::PreconditionChebyshev::vector_updates
      (src, data.matrix_diagonal_inverse, false, factor1, factor2, update1,
       update2, dst);
    }
}



template <typename MatrixType, typename VectorType>
inline
void PreconditionChebyshev<MatrixType,VectorType>::clear ()
{
  is_initialized = false;
  matrix_ptr = 0;
  data.matrix_diagonal_inverse.reinit(0);
  update1.reinit(0);
  update2.reinit(0);
}


template <typename MatrixType, typename VectorType>
inline
typename PreconditionChebyshev<MatrixType,VectorType>::size_type
PreconditionChebyshev<MatrixType,VectorType>::m () const
{
  Assert (matrix_ptr!=0, ExcNotInitialized());
  return matrix_ptr->m();
}


template <typename MatrixType, typename VectorType>
inline
typename PreconditionChebyshev<MatrixType,VectorType>::size_type
PreconditionChebyshev<MatrixType,VectorType>::n () const
{
  Assert (matrix_ptr!=0, ExcNotInitialized());
  return matrix_ptr->n();
}

#endif // DOXYGEN

DEAL_II_NAMESPACE_CLOSE

#endif