This file is indexed.

/usr/include/deal.II/meshworker/integration_info.templates.h is in libdeal.ii-dev 8.4.2-2+b1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
// ---------------------------------------------------------------------
//
// Copyright (C) 2009 - 2015 by the deal.II authors
//
// This file is part of the deal.II library.
//
// The deal.II library is free software; you can use it, redistribute
// it, and/or modify it under the terms of the GNU Lesser General
// Public License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
// The full text of the license can be found in the file LICENSE at
// the top level of the deal.II distribution.
//
// ---------------------------------------------------------------------

#include <deal.II/meshworker/dof_info.h>
#include <deal.II/meshworker/integration_info.h>
#include <deal.II/base/quadrature_lib.h>

DEAL_II_NAMESPACE_OPEN


namespace MeshWorker
{
  template<int dim, int sdim>
  void
  IntegrationInfo<dim,sdim>::initialize_data(
    const std_cxx11::shared_ptr<VectorDataBase<dim,sdim> > &data)
  {
    global_data = data;
    const unsigned int nqp = fevalv[0]->n_quadrature_points;

    values.resize(global_data->n_values());
    // For all selected finite
    // element functions
    for (unsigned int i=0; i<values.size(); ++i)
      {
        values[i].resize(n_components);
        // For all components
        for (unsigned int j=0; j<values[i].size(); ++j)
          {
            values[i][j].resize(nqp);
          }
      }

    gradients.resize(global_data->n_gradients());
    // For all selected finite
    // element functions
    for (unsigned int i=0; i<gradients.size(); ++i)
      {
        gradients[i].resize(n_components);
        // For all components
        for (unsigned int j=0; j<gradients[i].size(); ++j)
          {
            gradients[i][j].resize(nqp);
          }
      }

    hessians.resize(global_data->n_hessians());
    // For all selected finite
    // element functions
    for (unsigned int i=0; i<hessians.size(); ++i)
      {
        hessians[i].resize(n_components);
        // For all components
        for (unsigned int j=0; j<hessians[i].size(); ++j)
          {
            hessians[i][j].resize(nqp);
          }
      }
  }


  template<int dim, int sdim>
  void
  IntegrationInfo<dim,sdim>::clear()
  {
    fevalv.resize(0);
  }



  template<int dim, int sdim>
  template <typename number>
  void
  IntegrationInfo<dim,sdim>::fill_local_data(const DoFInfo<dim, sdim, number> &info, bool split_fevalues)
  {
    if (split_fevalues)
      {
        unsigned int comp = 0;
        // Loop over all blocks
        for (unsigned int b=0; b<info.block_info->local().size(); ++b)
          {
            const unsigned int fe_no = info.block_info->base_element(b);
            const FEValuesBase<dim,sdim> &fe = this->fe_values(fe_no);
            const unsigned int n_comp = fe.get_fe().n_components();
            const unsigned int block_start = info.block_info->local().block_start(b);
            const unsigned int block_size = info.block_info->local().block_size(b);

            if (info.level_cell)
              this->global_data->mg_fill(values, gradients, hessians, fe, info.cell->level(), info.indices,
                                         comp, n_comp, block_start, block_size);
            else
              this->global_data->fill(values, gradients, hessians, fe, info.indices,
                                      comp, n_comp, block_start, block_size);
            comp += n_comp;
          }
      }
    else
      {
        const FEValuesBase<dim,sdim> &fe = this->fe_values(0);
        const unsigned int n_comp = fe.get_fe().n_components();
        if (info.level_cell)
          this->global_data->mg_fill(values, gradients, hessians, fe, info.cell->level(), info.indices,
                                     0, n_comp, 0, info.indices.size());
        else
          this->global_data->fill(values, gradients, hessians, fe, info.indices,
                                  0, n_comp, 0, info.indices.size());
      }
  }


  template<int dim, int sdim>
  std::size_t
  IntegrationInfo<dim,sdim>::memory_consumption () const
  {
    std::size_t mem = sizeof(*this)
                      + MemoryConsumption::memory_consumption(fevalv)
                      - sizeof (fevalv);
    for (unsigned int i=0; i<fevalv.size(); ++i)
      mem += fevalv[i]->memory_consumption();
    return mem;
  }

//----------------------------------------------------------------------//

  template<int dim, int sdim>
  IntegrationInfoBox<dim,sdim>::IntegrationInfoBox()
  {
    cell_flags = update_default;
    boundary_flags = update_default;
    face_flags = update_default;
    neighbor_flags = update_default;
  }


  template<int dim, int sdim>
  void
  IntegrationInfoBox<dim,sdim>::initialize_update_flags (bool neighbor_geometry)
  {
    cell_flags |= update_JxW_values;
    boundary_flags |= UpdateFlags(update_JxW_values | update_normal_vectors);
    face_flags |= boundary_flags;
    neighbor_flags |= neighbor_geometry
                      ? boundary_flags
                      : update_default;

    if (cell_selector.has_values() != 0) cell_flags |= update_values;
    if (cell_selector.has_gradients() != 0) cell_flags |= update_gradients;
    if (cell_selector.has_hessians() != 0) cell_flags |= update_hessians;

    if (boundary_selector.has_values() != 0) boundary_flags |= update_values;
    if (boundary_selector.has_gradients() != 0) boundary_flags |= update_gradients;
    if (boundary_selector.has_hessians() != 0) boundary_flags |= update_hessians;

    if (face_selector.has_values() != 0) face_flags |= update_values;
    if (face_selector.has_gradients() != 0) face_flags |= update_gradients;
    if (face_selector.has_hessians() != 0) face_flags |= update_hessians;

    if (face_selector.has_values() != 0) neighbor_flags |= update_values;
    if (face_selector.has_gradients() != 0) neighbor_flags |= update_gradients;
    if (face_selector.has_hessians() != 0) neighbor_flags |= update_hessians;
  }


  template <int dim, int sdim>
  void
  IntegrationInfoBox<dim,sdim>::add_update_flags(
    const UpdateFlags flags,
    bool cell,
    bool boundary,
    bool face,
    bool neighbor)
  {
    if (cell) cell_flags |= flags;
    if (boundary) boundary_flags |= flags;
    if (face) face_flags |= flags;
    if (neighbor) neighbor_flags |= flags;
  }


  template<int dim, int sdim>
  std::size_t
  IntegrationInfoBox<dim,sdim>::memory_consumption () const
  {
    std::size_t mem = sizeof(*this)
                      + MemoryConsumption::memory_consumption(cell_quadrature)
                      - sizeof (cell_quadrature)
                      + MemoryConsumption::memory_consumption(boundary_quadrature)
                      - sizeof (boundary_quadrature)
                      + MemoryConsumption::memory_consumption(face_quadrature)
                      - sizeof (face_quadrature)
                      + MemoryConsumption::memory_consumption(cell_selector)
                      -sizeof (cell_selector)
                      + MemoryConsumption::memory_consumption(boundary_selector)
                      -sizeof (boundary_selector)
                      + MemoryConsumption::memory_consumption(face_selector)
                      -sizeof (face_selector)
                      + MemoryConsumption::memory_consumption(cell)
                      - sizeof(cell)
                      + MemoryConsumption::memory_consumption(boundary)
                      - sizeof(boundary)
                      + MemoryConsumption::memory_consumption(face)
                      - sizeof(face)
                      + MemoryConsumption::memory_consumption(subface)
                      - sizeof(subface)
                      + MemoryConsumption::memory_consumption(neighbor)
                      - sizeof(neighbor);
//   if (cell_data != 0)
//     mem += MemoryConsumption::memory_consumption(*cell_data);
//   if (boundary_data != 0)
//     mem += MemoryConsumption::memory_consumption(*boundary_data);
//   if (face_data != 0)
//     mem += MemoryConsumption::memory_consumption(*face_data);

    return mem;
  }
}


DEAL_II_NAMESPACE_CLOSE