/usr/share/doc/phylip/examples/tests/neighbor.ok is in phylip 1:3.696+dfsg-5.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 | Neighbor-Joining/UPGMA method version 3.6b
Settings for this run:
N Neighbor-joining or UPGMA tree? Neighbor-joining
O Outgroup root? No, use as outgroup species 1
L Lower-triangular data matrix? No
R Upper-triangular data matrix? No
S Subreplicates? No
J Randomize input order of species? No. Use input order
M Analyze multiple data sets? No
0 Terminal type (IBM PC, ANSI, none)? (none)
1 Print out the data at start of run No
2 Print indications of progress of run Yes
3 Print out tree Yes
4 Write out trees onto tree file? Yes
Y to accept these or type the letter for one to change
[2J[H
Neighbor-Joining/UPGMA method version 3.6b
Settings for this run:
N Neighbor-joining or UPGMA tree? Neighbor-joining
O Outgroup root? No, use as outgroup species 1
L Lower-triangular data matrix? No
R Upper-triangular data matrix? No
S Subreplicates? No
J Randomize input order of species? No. Use input order
M Analyze multiple data sets? No
0 Terminal type (IBM PC, ANSI, none)? IBM PC
1 Print out the data at start of run No
2 Print indications of progress of run Yes
3 Print out tree Yes
4 Write out trees onto tree file? Yes
Y to accept these or type the letter for one to change
Cycle 4: species 1 ( 0.66204) joins species 2 ( 0.57646)
Cycle 3: species 6 ( 0.14924) joins species 7 ( 0.10776)
Cycle 2: species 5 ( 0.12276) joins node 6 ( 0.04809)
Cycle 1: species 4 ( 0.21738) joins node 5 ( 0.03822)
last cycle:
node 1 ( 0.30172) joins species 3 ( 0.31418) joins node 4 ( 0.03714)
Output written on file "outfile"
Tree written on file "outtree"
Done.
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