/usr/lib/python2.7/dist-packages/dolfin_utils/pjobs/torque.py is in python-dolfin 2016.2.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 | # -*- coding: utf-8 -*-
#!/usr/bin/env python
# Copyright (C) 2009 Martin Sandve Alnæs
#
# This file is part of DOLFIN.
#
# DOLFIN is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# DOLFIN is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
# Modified Johan Hake 2011
from __future__ import print_function
import os
# Template for script sent to qsub
template = """#!/bin/bash
%(pbs)s
# enter the job-directory
cd %(workdir)s
# add /usr/local/bin in path
PATH=$PATH:/usr/local/bin
# setup environment
%(paths)s
%(setup)s
# execute job
%(job)s
"""
def job_script(job, jobname, nodes, ppn, walltime, mem, vmem, workdir, \
email, paths, setup, keep_environment, queue, parallel_environment):
"""
Generate a torque specific job script
"""
if queue or parallel_environment:
print("Warning: 'queue' and 'parallel_environment' is not available "\
"for the 'torque' backend")
# Set working dir
if workdir == os.path.abspath(os.getcwd()):
workdir = "$PBS_O_WORKDIR"
pbs = []
pbs.append("-j oe")
pbs_resources = "-lnodes=%d:ppn=%d,walltime=%d:00:00" % (nodes, ppn, walltime)
if mem:
pbs_resources += ",mem=" + mem
if vmem:
pbs_resources += ",vmem=" + vmem
pbs.append(pbs_resources)
if email:
pbs.append("-m abe")
pbs.append("-M %s" % email)
pbs.append("-N %s" % jobname)
if keep_environment:
pbs.append("-V")
pbs.append("")
pbs = "\n".join("#PBS %s" % a for a in pbs)
args = dict(pbs=pbs,
workdir=workdir,
paths=paths,
setup=setup,
job=job)
return template % args
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