/usr/lib/R/site-library/graph/NAMESPACE is in r-bioc-graph 1.52.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 | useDynLib(BioC_graph, graph_attrData_lookup,
graph_bitarray_Intersect_Attrs, graph_bitarray_Union_Attrs,
graph_bitarray_edgeSetToMatrix, graph_bitarray_getBitCell,
graph_bitarray_getEdgeAttrOrder, graph_bitarray_removeEdges,
graph_bitarray_rowColPos, graph_bitarray_set,
graph_bitarray_subGraph, graph_bitarray_sum,
graph_bitarray_transpose, graph_bitarray_undirect,
graph_intersection, graph_is_adjacent, graph_listLen,
graph_sublist_assign)
importClassesFrom(methods, ANY, character, list, logical, matrix,
missing, "NULL", numeric, oldClass, vector)
importMethodsFrom(methods, coerce, initialize, show)
importClassesFrom(BiocGenerics, connection, dist)
importFrom(BiocGenerics, union)
importFrom(methods, as, callGeneric, is, isVirtualClass, new,
slot, "slot<-", slotNames, validObject)
importFrom(stats, as.dist, dhyper, phyper, runif)
importFrom(stats4, plot)
importFrom(utils, CRAN.packages, modifyList)
exportClasses(distGraph,
clusterGraph, graph, graphNEL,
graphAM, attrData, simpleEdge, edgeSet, edgeSetNEL,
edgeSetAM, multiGraph, renderInfo, MultiGraph, graphBAM, graphBase)
exportMethods(DFS, Dist, acc, addEdge, addNode, adj, adjacencyMatrix, clearNode,
clusteringCoefficient, combineNodes, complement, connComp,
degree, dumpGXL, edgeL, edgeMatrix, edgeNames, edgeWeights,
edgemode, "edgemode<-", edges, "nodes<-", fromGXL, inEdges,
initialize, intersection, intersection2, isAdjacent,
isConnected, isDirected, join, nodes, numNodes, numEdges, plot,
removeEdge, removeNode, show, subGraph, threshold, toGXL, union,
validateGXL, coerce, toDotR, attrDefaults, "attrDefaults<-",
edgeDataDefaults, "edgeDataDefaults<-", mgEdgeDataDefaults,
"mgEdgeDataDefaults<-", nodeDataDefaults, "nodeDataDefaults<-",
edgeData, "edgeData<-", nodeData, "nodeData<-", attrDataItem,
"attrDataItem<-", "removeAttrDataItem<-", ugraph, leaves,
updateGraph, extractFromTo, graphIntersect, graphUnion,
removeEdgesByWeight, edgeSets)
export(graphNEL, graphAM, boundary, buildRepDepGraph, calcProb,
calcSumProb, duplicatedEdges, graph2SparseM, listEdges,
randomEGraph, randomGraph, randomNodeGraph, validGraph, eWV,
pathWeights, .dropEdges, aveNumEdges, sparseM2Graph,
gxlTreeNEL, ftM2adjM, ftM2graphNEL, .ftM2other, int2ftM,
ftM2int, aM2bpG, mostEdges, numNoEdges, reverseEdgeDirections,
ugraphOld)
export(graph.par, graph.par.get, graphRenderInfo,
nodeRenderInfo, edgeRenderInfo, parRenderInfo,
"nodeRenderInfo<-", "edgeRenderInfo<-", "parRenderInfo<-",
"graphRenderInfo<-", toDotWithRI)
export(graphBAM)
export(MultiGraph, eweights, edgeSetIntersect0, edgeSetUnion0, extractFromTo, subsetEdgeSets,
extractGraphAM, extractGraphBAM, mgEdgeData, "mgEdgeData<-")
S3method(write,tlp)
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