/usr/lib/R/site-library/IRanges/INDEX is in r-bioc-iranges 2.8.1-1+b1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 | AtomicList Lists of Atomic Vectors in Natural and Rle Form
AtomicList-utils Common operations on AtomicList objects
CompressedHitsList-class
CompressedHitsList objects
CompressedList-class CompressedList objects
DataFrame-utils Common operations on DataFrame objects
DataFrameList-class List of DataFrames
GappedRanges-class GappedRanges objects (DEFUNCT!)
Grouping-class Grouping objects
Hits-examples Examples of basic manipulation of Hits objects
IRanges-class IRanges and NormalIRanges objects
IRanges-constructor The IRanges constructor and supporting
functions
IRanges-utils IRanges utility functions
IRangesList-class List of IRanges and NormalIRanges
MaskCollection-class MaskCollection objects
NCList-class Nested Containment List objects
RangedData-class Data on ranges
RangedDataList-class Lists of RangedData (DEFUNCT!)
RangedSelection-class Selection of ranges and columns
Ranges-class Ranges objects
Ranges-comparison Comparing and ordering ranges
RangesList-class List of Ranges
RleViews-class The RleViews class
RleViewsList-class List of RleViews
Views-class Views objects
ViewsList-class List of Views
bind-arrays Bind arrays along their rows or columns
coverage-methods Coverage of a set of ranges
extractList Group elements of a vector-like object into a
list-like object
findOverlaps-methods Finding overlapping ranges
inter-range-methods Inter range transformations of a Ranges, Views,
RangesList, MaskCollection, or RangedData
object
intra-range-methods Intra range transformations of a Ranges, Views,
RangesList, or MaskCollection object
multisplit Split elements belonging to multiple groups
nearest-methods Finding the nearest range neighbor
ranges,Rle-method Rle objects (old man page)
rdapply Applying over spaces (DEFUNCT!)
read.Mask Read a mask from a file
reverse reverse
setops-methods Set operations on Ranges and RangesList objects
slice-methods Slice a vector-like or list-like object
stack,List-method List objects (old man page)
unsplit,List-method 2 methods that should be documented somewhere
else
view-summarization-methods
Summarize views on a vector-like object with
numeric values
window<-,Vector-method
Vector objects (old man page)
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