/usr/include/Bpp/Seq/Alphabet.all is in libbpp-seq-dev 2.0.3-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | #include "Alphabet/AbstractAlphabet.h"
#include "Alphabet/Alphabet.h"
#include "Alphabet/AlphabetExceptions.h"
#include "Alphabet/AlphabetState.h"
#include "Alphabet/AlphabetTools.h"
#include "Alphabet/BinaryAlphabet.h"
#include "Alphabet/CaseMaskedAlphabet.h"
#include "Alphabet/CodonAlphabet.h"
#include "Alphabet/DNA.h"
#include "Alphabet/DefaultAlphabet.h"
#include "Alphabet/EchinodermMitochondrialCodonAlphabet.h"
#include "Alphabet/InvertebrateMitochondrialCodonAlphabet.h"
#include "Alphabet/LetterAlphabet.h"
#include "Alphabet/NucleicAlphabet.h"
#include "Alphabet/NucleicAlphabetState.h"
#include "Alphabet/ProteicAlphabet.h"
#include "Alphabet/ProteicAlphabetState.h"
#include "Alphabet/RNA.h"
#include "Alphabet/StandardCodonAlphabet.h"
#include "Alphabet/VertebrateMitochondrialCodonAlphabet.h"
#include "Alphabet/WordAlphabet.h"
#include "Alphabet/YeastMitochondrialCodonAlphabet.h"
#include "Alphabet/RNY.h"
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