/usr/share/perl5/Bio/Chado/Schema/Result/Companalysis/Analysis.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 | package Bio::Chado::Schema::Result::Companalysis::Analysis;
BEGIN {
$Bio::Chado::Schema::Result::Companalysis::Analysis::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Companalysis::Analysis::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Companalysis::Analysis
=head1 DESCRIPTION
An analysis is a particular type of a
computational analysis; it may be a blast of one sequence against
another, or an all by all blast, or a different kind of analysis
altogether. It is a single unit of computation.
=cut
__PACKAGE__->table("analysis");
=head1 ACCESSORS
=head2 analysis_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'analysis_analysis_id_seq'
=head2 name
data_type: 'varchar'
is_nullable: 1
size: 255
A way of grouping analyses. This
should be a handy short identifier that can help people find an
analysis they want. For instance "tRNAscan", "cDNA", "FlyPep",
"SwissProt", and it should not be assumed to be unique. For instance, there may be lots of separate analyses done against a cDNA database.
=head2 description
data_type: 'text'
is_nullable: 1
=head2 program
data_type: 'varchar'
is_nullable: 0
size: 255
Program name, e.g. blastx, blastp, sim4, genscan.
=head2 programversion
data_type: 'varchar'
is_nullable: 0
size: 255
Version description, e.g. TBLASTX 2.0MP-WashU [09-Nov-2000].
=head2 algorithm
data_type: 'varchar'
is_nullable: 1
size: 255
Algorithm name, e.g. blast.
=head2 sourcename
data_type: 'varchar'
is_nullable: 1
size: 255
Source name, e.g. cDNA, SwissProt.
=head2 sourceversion
data_type: 'varchar'
is_nullable: 1
size: 255
=head2 sourceuri
data_type: 'text'
is_nullable: 1
This is an optional, permanent URL or URI for the source of the analysis. The idea is that someone could recreate the analysis directly by going to this URI and fetching the source data (e.g. the blast database, or the training model).
=head2 timeexecuted
data_type: 'timestamp'
default_value: current_timestamp
is_nullable: 0
original: {default_value => \"now()"}
=cut
__PACKAGE__->add_columns(
"analysis_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "analysis_analysis_id_seq",
},
"name",
{ data_type => "varchar", is_nullable => 1, size => 255 },
"description",
{ data_type => "text", is_nullable => 1 },
"program",
{ data_type => "varchar", is_nullable => 0, size => 255 },
"programversion",
{ data_type => "varchar", is_nullable => 0, size => 255 },
"algorithm",
{ data_type => "varchar", is_nullable => 1, size => 255 },
"sourcename",
{ data_type => "varchar", is_nullable => 1, size => 255 },
"sourceversion",
{ data_type => "varchar", is_nullable => 1, size => 255 },
"sourceuri",
{ data_type => "text", is_nullable => 1 },
"timeexecuted",
{
data_type => "timestamp",
default_value => \"current_timestamp",
is_nullable => 0,
original => { default_value => \"now()" },
},
);
__PACKAGE__->set_primary_key("analysis_id");
__PACKAGE__->add_unique_constraint("analysis_c1", ["program", "programversion", "sourcename"]);
=head1 RELATIONS
=head2 analysisfeatures
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Companalysis::Analysisfeature>
=cut
__PACKAGE__->has_many(
"analysisfeatures",
"Bio::Chado::Schema::Result::Companalysis::Analysisfeature",
{ "foreign.analysis_id" => "self.analysis_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 analysisprops
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Companalysis::Analysisprop>
=cut
__PACKAGE__->has_many(
"analysisprops",
"Bio::Chado::Schema::Result::Companalysis::Analysisprop",
{ "foreign.analysis_id" => "self.analysis_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 phylotrees
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Phylogeny::Phylotree>
=cut
__PACKAGE__->has_many(
"phylotrees",
"Bio::Chado::Schema::Result::Phylogeny::Phylotree",
{ "foreign.analysis_id" => "self.analysis_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 quantifications
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::Quantification>
=cut
__PACKAGE__->has_many(
"quantifications",
"Bio::Chado::Schema::Result::Mage::Quantification",
{ "foreign.analysis_id" => "self.analysis_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:XYC5XhRez+x6ytnUB7nVOw
# You can replace this text with custom content, and it will be preserved on regeneration
1;
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