/usr/share/perl5/Bio/Chado/Schema/Result/Cv/Cvtermpath.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 | package Bio::Chado::Schema::Result::Cv::Cvtermpath;
BEGIN {
$Bio::Chado::Schema::Result::Cv::Cvtermpath::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Cv::Cvtermpath::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Cv::Cvtermpath
=head1 DESCRIPTION
The reflexive transitive closure of
the cvterm_relationship relation.
=cut
__PACKAGE__->table("cvtermpath");
=head1 ACCESSORS
=head2 cvtermpath_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'cvtermpath_cvtermpath_id_seq'
=head2 type_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
The relationship type that
this is a closure over. If null, then this is a closure over ALL
relationship types. If non-null, then this references a relationship
cvterm - note that the closure will apply to both this relationship
AND the OBO_REL:is_a (subclass) relationship.
=head2 subject_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=head2 object_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=head2 cv_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
Closures will mostly be within
one cv. If the closure of a relationship traverses a cv, then this
refers to the cv of the object_id cvterm.
=head2 pathdistance
data_type: 'integer'
is_nullable: 1
The number of steps
required to get from the subject cvterm to the object cvterm, counting
from zero (reflexive relationship).
=cut
__PACKAGE__->add_columns(
"cvtermpath_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "cvtermpath_cvtermpath_id_seq",
},
"type_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"subject_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"object_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"cv_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"pathdistance",
{ data_type => "integer", is_nullable => 1 },
);
__PACKAGE__->set_primary_key("cvtermpath_id");
__PACKAGE__->add_unique_constraint(
"cvtermpath_c1",
["subject_id", "object_id", "type_id", "pathdistance"],
);
=head1 RELATIONS
=head2 type
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Cv::Cvterm>
=cut
__PACKAGE__->belongs_to(
"type",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "type_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 object
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Cv::Cvterm>
=cut
__PACKAGE__->belongs_to(
"object",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "object_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 subject
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Cv::Cvterm>
=cut
__PACKAGE__->belongs_to(
"subject",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "subject_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 cv
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Cv::Cv>
=cut
__PACKAGE__->belongs_to(
"cv",
"Bio::Chado::Schema::Result::Cv::Cv",
{ cv_id => "cv_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:LIl0GlpFa7htKB72YF8f5w
# You can replace this text with custom content, and it will be preserved on regeneration
1;
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