/usr/share/perl5/Bio/Chado/Schema/Result/Mage/Biomaterial.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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BEGIN {
$Bio::Chado::Schema::Result::Mage::Biomaterial::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Mage::Biomaterial::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Mage::Biomaterial
=head1 DESCRIPTION
A biomaterial represents the MAGE concept of BioSource, BioSample, and LabeledExtract. It is essentially some biological material (tissue, cells, serum) that may have been processed. Processed biomaterials should be traceable back to raw biomaterials via the biomaterialrelationship table.
=cut
__PACKAGE__->table("biomaterial");
=head1 ACCESSORS
=head2 biomaterial_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'biomaterial_biomaterial_id_seq'
=head2 taxon_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
=head2 biosourceprovider_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
=head2 dbxref_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
=head2 name
data_type: 'text'
is_nullable: 1
=head2 description
data_type: 'text'
is_nullable: 1
=cut
__PACKAGE__->add_columns(
"biomaterial_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "biomaterial_biomaterial_id_seq",
},
"taxon_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"biosourceprovider_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"dbxref_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"name",
{ data_type => "text", is_nullable => 1 },
"description",
{ data_type => "text", is_nullable => 1 },
);
__PACKAGE__->set_primary_key("biomaterial_id");
__PACKAGE__->add_unique_constraint("biomaterial_c1", ["name"]);
=head1 RELATIONS
=head2 assay_biomaterials
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::AssayBiomaterial>
=cut
__PACKAGE__->has_many(
"assay_biomaterials",
"Bio::Chado::Schema::Result::Mage::AssayBiomaterial",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 taxon
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Organism::Organism>
=cut
__PACKAGE__->belongs_to(
"taxon",
"Bio::Chado::Schema::Result::Organism::Organism",
{ organism_id => "taxon_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 dbxref
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::General::Dbxref>
=cut
__PACKAGE__->belongs_to(
"dbxref",
"Bio::Chado::Schema::Result::General::Dbxref",
{ dbxref_id => "dbxref_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 biosourceprovider
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Contact::Contact>
=cut
__PACKAGE__->belongs_to(
"biosourceprovider",
"Bio::Chado::Schema::Result::Contact::Contact",
{ contact_id => "biosourceprovider_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 biomaterial_dbxrefs
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::BiomaterialDbxref>
=cut
__PACKAGE__->has_many(
"biomaterial_dbxrefs",
"Bio::Chado::Schema::Result::Mage::BiomaterialDbxref",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 biomaterialprops
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::Biomaterialprop>
=cut
__PACKAGE__->has_many(
"biomaterialprops",
"Bio::Chado::Schema::Result::Mage::Biomaterialprop",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 biomaterial_relationship_subjects
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::BiomaterialRelationship>
=cut
__PACKAGE__->has_many(
"biomaterial_relationship_subjects",
"Bio::Chado::Schema::Result::Mage::BiomaterialRelationship",
{ "foreign.subject_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 biomaterial_relationship_objects
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::BiomaterialRelationship>
=cut
__PACKAGE__->has_many(
"biomaterial_relationship_objects",
"Bio::Chado::Schema::Result::Mage::BiomaterialRelationship",
{ "foreign.object_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 biomaterial_treatments
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::BiomaterialTreatment>
=cut
__PACKAGE__->has_many(
"biomaterial_treatments",
"Bio::Chado::Schema::Result::Mage::BiomaterialTreatment",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 treatments
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::Treatment>
=cut
__PACKAGE__->has_many(
"treatments",
"Bio::Chado::Schema::Result::Mage::Treatment",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:/VQ8SGvWjdco22wrum1JHg
# You can replace this text with custom content, and it will be preserved on regeneration
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