This file is indexed.

/usr/share/perl5/Bio/Chado/Schema/Result/Mage/Element.pm is in libbio-chado-schema-perl 0.20000-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
package Bio::Chado::Schema::Result::Mage::Element;
BEGIN {
  $Bio::Chado::Schema::Result::Mage::Element::AUTHORITY = 'cpan:RBUELS';
}
{
  $Bio::Chado::Schema::Result::Mage::Element::VERSION = '0.20000';
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';


=head1 NAME

Bio::Chado::Schema::Result::Mage::Element

=head1 DESCRIPTION

Represents a feature of the array. This is typically a region of the array coated or bound to DNA.

=cut

__PACKAGE__->table("element");

=head1 ACCESSORS

=head2 element_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'element_element_id_seq'

=head2 feature_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

=head2 arraydesign_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

=head2 type_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

=head2 dbxref_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

=cut

__PACKAGE__->add_columns(
  "element_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "element_element_id_seq",
  },
  "feature_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  "arraydesign_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "type_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  "dbxref_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
);
__PACKAGE__->set_primary_key("element_id");
__PACKAGE__->add_unique_constraint("element_c1", ["feature_id", "arraydesign_id"]);

=head1 RELATIONS

=head2 feature

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::Sequence::Feature>

=cut

__PACKAGE__->belongs_to(
  "feature",
  "Bio::Chado::Schema::Result::Sequence::Feature",
  { feature_id => "feature_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);

=head2 type

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::Cv::Cvterm>

=cut

__PACKAGE__->belongs_to(
  "type",
  "Bio::Chado::Schema::Result::Cv::Cvterm",
  { cvterm_id => "type_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);

=head2 arraydesign

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::Mage::Arraydesign>

=cut

__PACKAGE__->belongs_to(
  "arraydesign",
  "Bio::Chado::Schema::Result::Mage::Arraydesign",
  { arraydesign_id => "arraydesign_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);

=head2 dbxref

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::General::Dbxref>

=cut

__PACKAGE__->belongs_to(
  "dbxref",
  "Bio::Chado::Schema::Result::General::Dbxref",
  { dbxref_id => "dbxref_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);

=head2 element_relationship_objects

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::ElementRelationship>

=cut

__PACKAGE__->has_many(
  "element_relationship_objects",
  "Bio::Chado::Schema::Result::Mage::ElementRelationship",
  { "foreign.object_id" => "self.element_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 element_relationship_subjects

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::ElementRelationship>

=cut

__PACKAGE__->has_many(
  "element_relationship_subjects",
  "Bio::Chado::Schema::Result::Mage::ElementRelationship",
  { "foreign.subject_id" => "self.element_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 elementresults

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Elementresult>

=cut

__PACKAGE__->has_many(
  "elementresults",
  "Bio::Chado::Schema::Result::Mage::Elementresult",
  { "foreign.element_id" => "self.element_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:RRDh549Rn1su0y6fYGzk5Q


# You can replace this text with custom content, and it will be preserved on regeneration
1;