/usr/share/perl5/Bio/Chado/Schema/Result/Phylogeny/PhylonodeOrganism.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 | package Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism;
BEGIN {
$Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism
=head1 DESCRIPTION
This linking table should only be used for nodes in taxonomy trees; it provides a mapping between the node and an organism. One node can have zero or one organisms, one organism can have zero or more nodes (although typically it should only have one in the standard NCBI taxonomy tree).
=cut
__PACKAGE__->table("phylonode_organism");
=head1 ACCESSORS
=head2 phylonode_organism_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'phylonode_organism_phylonode_organism_id_seq'
=head2 phylonode_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
One phylonode cannot refer to >1 organism.
=head2 organism_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=cut
__PACKAGE__->add_columns(
"phylonode_organism_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "phylonode_organism_phylonode_organism_id_seq",
},
"phylonode_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"organism_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("phylonode_organism_id");
__PACKAGE__->add_unique_constraint("phylonode_organism_phylonode_id_key", ["phylonode_id"]);
=head1 RELATIONS
=head2 phylonode
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Phylogeny::Phylonode>
=cut
__PACKAGE__->belongs_to(
"phylonode",
"Bio::Chado::Schema::Result::Phylogeny::Phylonode",
{ phylonode_id => "phylonode_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 organism
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Organism::Organism>
=cut
__PACKAGE__->belongs_to(
"organism",
"Bio::Chado::Schema::Result::Organism::Organism",
{ organism_id => "organism_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:59
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:9+K+tdAa3FZn8QK19S5zrQ
# You can replace this text with custom content, and it will be preserved on regeneration
1;
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