/usr/share/perl5/Bio/Chado/Schema/Result/Project/Project.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 | package Bio::Chado::Schema::Result::Project::Project;
BEGIN {
$Bio::Chado::Schema::Result::Project::Project::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Project::Project::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Project::Project - Standard Chado flexible property table for projects.
=cut
__PACKAGE__->table("project");
=head1 ACCESSORS
=head2 project_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'project_project_id_seq'
=head2 name
data_type: 'varchar'
is_nullable: 0
size: 255
=head2 description
data_type: 'varchar'
is_nullable: 0
size: 255
=cut
__PACKAGE__->add_columns(
"project_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "project_project_id_seq",
},
"name",
{ data_type => "varchar", is_nullable => 0, size => 255 },
"description",
{ data_type => "varchar", is_nullable => 0, size => 255 },
);
__PACKAGE__->set_primary_key("project_id");
__PACKAGE__->add_unique_constraint("project_c1", ["name"]);
=head1 RELATIONS
=head2 assay_projects
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Mage::AssayProject>
=cut
__PACKAGE__->has_many(
"assay_projects",
"Bio::Chado::Schema::Result::Mage::AssayProject",
{ "foreign.project_id" => "self.project_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 nd_experiment_projects
Type: has_many
Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentProject>
=cut
__PACKAGE__->has_many(
"nd_experiment_projects",
"Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentProject",
{ "foreign.project_id" => "self.project_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 project_contacts
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Project::ProjectContact>
=cut
__PACKAGE__->has_many(
"project_contacts",
"Bio::Chado::Schema::Result::Project::ProjectContact",
{ "foreign.project_id" => "self.project_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 projectprops
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Project::Projectprop>
=cut
__PACKAGE__->has_many(
"projectprops",
"Bio::Chado::Schema::Result::Project::Projectprop",
{ "foreign.project_id" => "self.project_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 project_pubs
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Project::ProjectPub>
=cut
__PACKAGE__->has_many(
"project_pubs",
"Bio::Chado::Schema::Result::Project::ProjectPub",
{ "foreign.project_id" => "self.project_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 project_relationship_subject_projects
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Project::ProjectRelationship>
=cut
__PACKAGE__->has_many(
"project_relationship_subject_projects",
"Bio::Chado::Schema::Result::Project::ProjectRelationship",
{ "foreign.subject_project_id" => "self.project_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 project_relationship_object_projects
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Project::ProjectRelationship>
=cut
__PACKAGE__->has_many(
"project_relationship_object_projects",
"Bio::Chado::Schema::Result::Project::ProjectRelationship",
{ "foreign.object_project_id" => "self.project_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2012-07-06 11:44:28
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:Xm+QPuYjkvnrESy2qIgGaA
=head2 create_projectprops
Usage: $set->create_projectprops({ baz => 2, foo => 'bar' });
Desc : convenience method to create project properties using cvterms
from the ontology with the given name
Args : hashref of { propname => value, ...},
options hashref as:
{
autocreate => 0,
(optional) boolean, if passed, automatically create cv,
cvterm, and dbxref rows if one cannot be found for the
given projectprop name. Default false.
cv_name => cv.name to use for the given projectprops.
Defaults to 'project_property',
db_name => db.name to use for autocreated dbxrefs,
default 'null',
dbxref_accession_prefix => optional, default
'autocreated:',
definitions => optional hashref of:
{ cvterm_name => definition,
}
to load into the cvterm table when autocreating cvterms
rank => force numeric rank. Be careful not to pass ranks that already exist
for the property type. The function will die in such case.
allow_duplicate_values => default false.
If true, allow duplicate instances of the same cvterm
and value in the properties of the project. Duplicate
values will have different ranks.
}
Ret : hashref of { propname => new projectprop object }
=cut
sub create_projectprops {
my ($self, $props, $opts) = @_;
# process opts
$opts->{cv_name} = 'project_property'
unless defined $opts->{cv_name};
return Bio::Chado::Schema::Util->create_properties
( properties => $props,
options => $opts,
row => $self,
prop_relation_name => 'projectprops',
);
}
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