/usr/share/perl5/Bio/Chado/Schema/Result/Sequence/FeatureCvterm.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 | package Bio::Chado::Schema::Result::Sequence::FeatureCvterm;
BEGIN {
$Bio::Chado::Schema::Result::Sequence::FeatureCvterm::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Sequence::FeatureCvterm::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Sequence::FeatureCvterm
=head1 DESCRIPTION
Associate a term from a cv with a feature, for example, GO annotation.
=cut
__PACKAGE__->table("feature_cvterm");
=head1 ACCESSORS
=head2 feature_cvterm_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'feature_cvterm_feature_cvterm_id_seq'
=head2 feature_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=head2 cvterm_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=head2 pub_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
Provenance for the annotation. Each annotation should have a single primary publication (which may be of the appropriate type for computational analyses) where more details can be found. Additional provenance dbxrefs can be attached using feature_cvterm_dbxref.
=head2 is_not
data_type: 'boolean'
default_value: false
is_nullable: 0
If this is set to true, then this annotation is interpreted as a NEGATIVE annotation - i.e. the feature does NOT have the specified function, process, component, part, etc. See GO docs for more details.
=head2 rank
data_type: 'integer'
default_value: 0
is_nullable: 0
=cut
__PACKAGE__->add_columns(
"feature_cvterm_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "feature_cvterm_feature_cvterm_id_seq",
},
"feature_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"cvterm_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"pub_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"is_not",
{ data_type => "boolean", default_value => \"false", is_nullable => 0 },
"rank",
{ data_type => "integer", default_value => 0, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("feature_cvterm_id");
__PACKAGE__->add_unique_constraint(
"feature_cvterm_c1",
["feature_id", "cvterm_id", "pub_id", "rank"],
);
=head1 RELATIONS
=head2 feature
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Sequence::Feature>
=cut
__PACKAGE__->belongs_to(
"feature",
"Bio::Chado::Schema::Result::Sequence::Feature",
{ feature_id => "feature_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 pub
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Pub::Pub>
=cut
__PACKAGE__->belongs_to(
"pub",
"Bio::Chado::Schema::Result::Pub::Pub",
{ pub_id => "pub_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 cvterm
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Cv::Cvterm>
=cut
__PACKAGE__->belongs_to(
"cvterm",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "cvterm_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 feature_cvterm_dbxrefs
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref>
=cut
__PACKAGE__->has_many(
"feature_cvterm_dbxrefs",
"Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref",
{ "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 feature_cvtermprops
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop>
=cut
__PACKAGE__->has_many(
"feature_cvtermprops",
"Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop",
{ "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
=head2 feature_cvterm_pubs
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub>
=cut
__PACKAGE__->has_many(
"feature_cvterm_pubs",
"Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub",
{ "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:IqSwB2Dg1C4TQu+BLEk5uQ
# You can replace this text with custom content, and it will be preserved on regeneration
1;
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