/usr/share/perl5/Bio/Chado/Schema/Result/Sequence/Featureprop.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 | package Bio::Chado::Schema::Result::Sequence::Featureprop;
BEGIN {
$Bio::Chado::Schema::Result::Sequence::Featureprop::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Sequence::Featureprop::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Sequence::Featureprop
=head1 DESCRIPTION
A feature can have any number of slot-value property tags attached to it. This is an alternative to hardcoding a list of columns in the relational schema, and is completely extensible.
=cut
__PACKAGE__->table("featureprop");
=head1 ACCESSORS
=head2 featureprop_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'featureprop_featureprop_id_seq'
=head2 feature_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=head2 type_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
The name of the
property/slot is a cvterm. The meaning of the property is defined in
that cvterm. Certain property types will only apply to certain feature
types (e.g. the anticodon property will only apply to tRNA features) ;
the types here come from the sequence feature property ontology.
=head2 value
data_type: 'text'
is_nullable: 1
The value of the property, represented as text. Numeric values are converted to their text representation. This is less efficient than using native database types, but is easier to query.
=head2 rank
data_type: 'integer'
default_value: 0
is_nullable: 0
Property-Value ordering. Any
feature can have multiple values for any particular property type -
these are ordered in a list using rank, counting from zero. For
properties that are single-valued rather than multi-valued, the
default 0 value should be used
=cut
__PACKAGE__->add_columns(
"featureprop_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "featureprop_featureprop_id_seq",
},
"feature_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"type_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"value",
{ data_type => "text", is_nullable => 1 },
"rank",
{ data_type => "integer", default_value => 0, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("featureprop_id");
__PACKAGE__->add_unique_constraint("featureprop_c1", ["feature_id", "type_id", "rank"]);
=head1 RELATIONS
=head2 feature
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Sequence::Feature>
=cut
__PACKAGE__->belongs_to(
"feature",
"Bio::Chado::Schema::Result::Sequence::Feature",
{ feature_id => "feature_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 type
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Cv::Cvterm>
=cut
__PACKAGE__->belongs_to(
"type",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "type_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 featureprop_pubs
Type: has_many
Related object: L<Bio::Chado::Schema::Result::Sequence::FeaturepropPub>
=cut
__PACKAGE__->has_many(
"featureprop_pubs",
"Bio::Chado::Schema::Result::Sequence::FeaturepropPub",
{ "foreign.featureprop_id" => "self.featureprop_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:59
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:uEjPjCmGofVPDR40/Weuow
=head1 ADDITIONAL RELATIONSHIPS
=head2 cvterm
Alias for type ( type_id foreign key into cvterm table)
=cut
__PACKAGE__->belongs_to
(
'cvterm',
'Bio::Chado::Schema::Result::Cv::Cvterm',
{ 'foreign.cvterm_id' => 'self.type_id' },
);
# You can replace this text with custom content, and it will be preserved on regeneration
1;
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