This file is indexed.

/usr/share/perl5/RDF/Trine/Pattern.pm is in librdf-trine-perl 1.019-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
# RDF::Trine::Pattern
# -----------------------------------------------------------------------------

=head1 NAME

RDF::Trine::Pattern - Class for basic graph patterns

=head1 VERSION

This document describes RDF::Trine::Pattern version 1.019

=cut

package RDF::Trine::Pattern;

use strict;
use warnings;
no warnings 'redefine';

use Data::Dumper;
use Log::Log4perl;
use Scalar::Util qw(blessed refaddr);
use List::Util qw(any);
use Carp qw(carp croak confess);
use RDF::Trine::Iterator qw(smap);
use RDF::Trine qw(iri);

######################################################################

our ($VERSION);
BEGIN {
	$VERSION	= '1.019';
}

######################################################################

=head1 METHODS

=over 4

=item C<< new ( @triples ) >>

Returns a new BasicGraphPattern structure.

=cut

sub new {
	my $class	= shift;
	my @triples	= @_;
	foreach my $t (@triples) {
		unless (blessed($t) and $t->isa('RDF::Trine::Statement')) {
			throw RDF::Trine::Error -text => "Patterns belonging to a BGP must be triples";
		}
	}
	return bless( [ @triples ], $class );
}

=item C<< construct_args >>

Returns a list of arguments that, passed to this class' constructor,
will produce a clone of this algebra pattern.

=cut

sub construct_args {
	my $self	= shift;
	return ($self->triples);
}

=item C<< triples >>

Returns a list of triples belonging to this BGP.

=cut

sub triples {
	my $self	= shift;
	return @$self;
}

=item C<< type >>

=cut

sub type {
	return 'BGP';
}

=item C<< sse >>

Returns the SSE string for this algebra expression.

=cut

sub sse {
	my $self	= shift;
	my $context	= shift;
	
	return sprintf(
		'(bgp %s)',
		join(' ', map { $_->sse( $context ) } $self->triples)
	);
}

=item C<< referenced_variables >>

Returns a list of the variable names used in this algebra expression.

=cut

sub referenced_variables {
	my $self	= shift;
	return RDF::Trine::_uniq(map { $_->referenced_variables } $self->triples);
}

=item C<< definite_variables >>

Returns a list of the variable names that will be bound after evaluating this algebra expression.

=cut

sub definite_variables {
	my $self	= shift;
	return RDF::Trine::_uniq(map { $_->definite_variables } $self->triples);
}

=item C<< clone >>

=cut

sub clone {
	my $self	= shift;
	my $class	= ref($self);
	return $class->new( map { $_->clone } $self->triples );
}

=item C<< bind_variables ( \%bound ) >>

Returns a new pattern with variables named in %bound replaced by their corresponding bound values.

=cut

sub bind_variables {
	my $self	= shift;
	my $class	= ref($self);
	my $bound	= shift;
	return $class->new( map { $_->bind_variables( $bound ) } $self->triples );
}

=item C<< subsumes ( $statement ) >>

Returns true if the pattern will subsume the $statement when matched against a
triple store.

=cut

sub subsumes {
	my $self	= shift;
	my $st		= shift;
	
	my $l		= Log::Log4perl->get_logger("rdf.trine.pattern");
	my @triples	= $self->triples;
	foreach my $t (@triples) {
		if ($t->subsumes( $st )) {
			$l->debug($self->sse . " \x{2292} " . $st->sse);
			return 1;
		}
	}
	return 0;
}

=item C<< merge_patterns ( @patterns ) >>

Given an array of patterns, this will merge them into one.

=cut

sub merge_patterns {
	my ($class, @patterns) = @_;
	my @all_triples;
	foreach my $pattern (@patterns) {
		unless (blessed($pattern) and $pattern->isa('RDF::Trine::Pattern')) {
			throw RDF::Trine::Error -text => "Patterns to be merged must be patterns themselves";
		}
		push(@all_triples, $pattern->triples);
	}
	return $class->new(@all_triples);
}

=item C<< sort_for_join_variables >>

Returns a new pattern object with the subpatterns of the referrant
sorted based on heuristics that ensure firstly that patterns can be
joined on the same variable and secondly on the usual selectivity
(i.e. how quickly the engine can drill down to the answer) of triple
patterns. Calls C<< subgroup >>, C<< sort_triples >> and C<<
merge_patterns >> in that order.

=cut

sub sort_for_join_variables {
	my $self	= shift;
	return $self if (scalar $self->triples == 1);

	my $class	= ref($self);
	my $l		= Log::Log4perl->get_logger("rdf.trine.pattern");
	$l->debug('Reordering ' . scalar $self->triples . ' triples for heuristical optimizations');

	my @sorted_triple_patterns = $self->subgroup;

	my @patterns;
	foreach my $pattern (@sorted_triple_patterns) {
		my $sorted = $pattern->sort_triples;
		push(@patterns, $sorted);
	}
	return $class->merge_patterns(@patterns);
}


=item C<< subgroup >>

Splits the pattern object up in an array of pattern objects where the
same triple patterns occur. It will group on common variables, so that
triple patterns can be joined together is in a group together. It will
also group triples that have no connection to other triples in a
group. It will then order the groups, first by number triples with
common variables, then by number of literals, then by the total number
of terms that are not variables.


=cut

sub subgroup {
	my $self = shift;
	my @triples = $self->triples;
	my $l		= Log::Log4perl->get_logger("rdf.trine.pattern");
	my %structure_counts;
	my %triples_by_tid;
	# First, we loop the dataset to compile some numbers for the
	# variables in each triple pattern.  This is to break the pattern
	# into subpatterns that can be joined on the same variable
	foreach my $t (@triples) {
		my $tid = refaddr($t);
		$triples_by_tid{$tid}  = $t;
		my $not_variable = 0;
		foreach my $n ($t->nodes) {
			if ($n->isa('RDF::Trine::Node::Variable')) {
				my $name = $n->name;
				$structure_counts{ $name }{ 'name' } = $name; # TODO: Worth doing in an array?
				push(@{$structure_counts{$name}{'claimed_patterns'}}, $tid);
				$structure_counts{ $name }{ 'common_variable_count' }++;
				$structure_counts{ $name }{ 'not_variable_count' } = 0 unless ($structure_counts{ $name }{ 'not_variable_count' });
				$structure_counts{ $name }{ 'literal_count' } = 0 unless ($structure_counts{ $name }{ 'literal_count' });
				foreach my $char (split(//, $n->as_string)) { # TODO: Use a more standard format
					$structure_counts{ $name }{ 'string_sum' } += ord($char);
				}
				foreach my $o ($t->nodes) {
					unless ($o->isa('RDF::Trine::Node::Variable')) {
						$structure_counts{ $name }{ 'not_variable_count' }++;
					}
					elsif ($o->isa('RDF::Trine::Node::Literal')) {
						$structure_counts{ $name }{ 'literal_count' }++;
					}
				}
			} else {
				$not_variable++;
			}
		}
		if ($not_variable == 3) { # Then, there are no variables in the pattern
			my $name = '_no_definite';
			$structure_counts{ $name }{ 'not_variable_count' } = $not_variable;
			$structure_counts{ $name }{ 'common_variable_count' } = 0;
			$structure_counts{ $name }{ 'literal_count' } = 0; # Doesn't mean anything now
			$structure_counts{ $name }{ 'string_sum' } = 0; # Doesn't mean anything now
			push(@{$structure_counts{$name}{'claimed_patterns'}}, $tid);
		}

	}

	# Group triple subpatterns with just one triple pattern
	my $just_ones;
	while (my ($name, $data) = each(%structure_counts)) {
		if($data->{'common_variable_count'} <= 1) {
			$just_ones->{'common_variable_count'} = 1;
			$just_ones->{'string_sum'} = 1;
			$just_ones->{'literal_count'} += $data->{'literal_count'};
			$just_ones->{'not_variable_count'} += $data->{'not_variable_count'};
			my @claimed = @{$data->{'claimed_patterns'}};
			unless (any { $_ == $claimed[0] } @{$just_ones->{'claimed_patterns'}}) {
				push(@{$just_ones->{'claimed_patterns'}}, $claimed[0]);
			}
			delete $structure_counts{$name};
		}
	}

	$l->trace('Results of structural analysis: ' . Dumper(\%structure_counts));
	$l->trace('Block of single-triple patterns: ' . Dumper($just_ones));

	# Now, sort the patterns in the order specified by first the number
	# of occurances of common variables, then the number of literals
	# and then the number of terms that are not variables
	my @sorted_patterns = sort {     $b->{'common_variable_count'} <=> $a->{'common_variable_count'} 
											or $b->{'literal_count'}         <=> $a->{'literal_count'}
											or $b->{'not_variable_count'}    <=> $a->{'not_variable_count'}
											or $b->{'string_sum'}            <=> $a->{'string_sum'} 
										} values(%structure_counts);

	push (@sorted_patterns, $just_ones);

	my @sorted_triple_patterns;

	# Now, loop through the sorted patterns, let the one with most
	# weight first select the triples it wants to join.  Within those
	# subpatterns, apply the sort order of triple pattern heuristic
	foreach my $item (@sorted_patterns) {
		my @triple_patterns;
		my $triples_left = scalar keys(%triples_by_tid);
		if ($triples_left > 2) {
			foreach my $tid (@{$item->{'claimed_patterns'}}) {
				if (defined($triples_by_tid{$tid})) {
					push(@triple_patterns, $triples_by_tid{$tid});
					delete $triples_by_tid{$tid};
				}
			}
			$l->debug("There are $triples_left triples left");
			push(@sorted_triple_patterns, RDF::Trine::Pattern->new(@triple_patterns)); # TODO: Better way to call ourselves?
		} else {
			$l->debug("There is a rest of $triples_left triples");
			push(@sorted_triple_patterns, RDF::Trine::Pattern->new(values(%triples_by_tid)));
			last;
		}
	}

	return @sorted_triple_patterns;
}

=item C<< sort_triples >>

Will sort the triple patterns based on heuristics that looks at how
many variables the patterns have, and where they occur, see REFERENCES
for details. Returns a new sorted pattern object.

=cut

sub sort_triples {
	my $self = shift;
	return $self->_hsp_heuristic_1_4_triple_pattern_order;
}

sub _hsp_heuristic_1_4_triple_pattern_order { # Heuristic 1 and 4 of HSP
	my $self	= shift;
	my $class	= ref($self);
	my @triples	= @$self;
	return $self if (scalar @triples == 1);
	my %triples_by_tid;
	foreach my $t (@triples) {
		my $tid = refaddr($t);
		$triples_by_tid{$tid}{'tid'} = $tid; # TODO: Worth doing this in an array?
		$triples_by_tid{$tid}{'triple'} = $t;
		$triples_by_tid{$tid}{'sum'} = _hsp_heuristic_triple_sum($t);
	}
	my @sorted_tids = sort { $a->{'sum'} <=> $b->{'sum'} } values(%triples_by_tid);
	my @sorted_triples;
	foreach my $entry (@sorted_tids) {
		push(@sorted_triples, $triples_by_tid{$entry->{'tid'}}->{'triple'});
	}
	return $class->new(@sorted_triples);
}

# The below function finds a number to aid sorting
# It takes into account Heuristic 1 and 4 of the HSP paper, see REFERENCES
# as well as that it was noted in the text that rdf:type is usually less selective.

# By assigning the integers to nodes, depending on whether they are in
# triple (subject, predicate, object), variables, rdf:type and
# literals, and sum them, they may be sorted. See code for the actual
# values used.

# Denoting s for bound subject, p for bound predicate, a for rdf:type
# as predicate, o for bound object and l for literal object and ? for
# variable, we get the following order, most of which are identical to
# the HSP:

# spl: 6
# spo: 8
# sao: 10
# s?l: 14
# s?o: 16
# ?pl: 25
# ?po: 27
# sp?: 30
# sa?: 32
# ??l: 33
# ??o: 35
# s??: 38
# ?p?: 49
# ?a?: 51
# ???: 57

# Note that this number is not intended as an estimate of selectivity,
# merely a sorting key, but further research may possibly create such
# numbers.

sub _hsp_heuristic_triple_sum {
	my $t = shift;
	my $sum = 0;
	if ($t->subject->is_variable) {
		$sum = 20;
	} else {
		$sum = 1;
	}
	if ($t->predicate->is_variable) {
		$sum += 10;
	} else {
		if ($t->predicate->equal(iri('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'))) {
			$sum += 4;
		} else {
			$sum += 2;
		}
	}
	if ($t->object->is_variable) {
		$sum += 27;
	} elsif ($t->object->is_literal) {
		$sum += 3;
	} else {
		$sum += 5;
	}
	my $l		= Log::Log4perl->get_logger("rdf.trine.pattern");
	# Now a trick to get an deterministic sort order, hard to test without.
	$sum *= 10000000;
	foreach my $c (split(//,$t->as_string)) {
		$sum += ord($c);
	}
	$l->debug($t->as_string . " triple has sorting sum " . $sum);
	return $sum;
}


	

1;

__END__

=back

=head1 BUGS

Please report any bugs or feature requests to through the GitHub web interface
at L<https://github.com/kasei/perlrdf/issues>.

=head1 REFERENCES

The heuristics to order triple patterns in this module is strongly
influenced by L<The ICS-FORTH Heuristics-based SPARQL Planner
(HSP)|http://www.ics.forth.gr/isl/index_main.php?l=e&c=645>.

=head1 AUTHOR

Gregory Todd Williams  C<< <gwilliams@cpan.org> >>

Kjetil Kjernsmo C<< <kjetilk@cpan.org> >>

=head1 COPYRIGHT

Copyright (c) 2006-2012 Gregory Todd Williams. This
program is free software; you can redistribute it and/or modify it under
the same terms as Perl itself.

=cut