python-notebook 5.2.2-1 / usr / lib / python2.7 / dist-packages / notebook / services / contents / filemanager.py

"""A contents manager that uses the local file system for storage."""

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.

from datetime import datetime
import errno
import io
import os
import shutil
import stat
import sys
import warnings
import mimetypes
import nbformat

from tornado import web

from .filecheckpoints import FileCheckpoints
from .fileio import FileManagerMixin
from .manager import ContentsManager
from ...utils import exists

from ipython_genutils.importstring import import_item
from traitlets import Any, Unicode, Bool, TraitError, observe, default, validate
from ipython_genutils.py3compat import getcwd, string_types

from notebook import _tz as tz
from notebook.utils import (
    is_hidden, is_file_hidden,
    to_api_path,
)
from notebook.base.handlers import AuthenticatedFileHandler

try:
    from os.path import samefile
except ImportError:
    # windows + py2
    from notebook.utils import samefile_simple as samefile

_script_exporter = None


def _post_save_script(model, os_path, contents_manager, **kwargs):
    """convert notebooks to Python script after save with nbconvert

    replaces `jupyter notebook --script`
    """
    from nbconvert.exporters.script import ScriptExporter
    warnings.warn("`_post_save_script` is deprecated and will be removed in Notebook 5.0", DeprecationWarning)

    if model['type'] != 'notebook':
        return

    global _script_exporter
    if _script_exporter is None:
        _script_exporter = ScriptExporter(parent=contents_manager)
    log = contents_manager.log

    base, ext = os.path.splitext(os_path)
    script, resources = _script_exporter.from_filename(os_path)
    script_fname = base + resources.get('output_extension', '.txt')
    log.info("Saving script /%s", to_api_path(script_fname, contents_manager.root_dir))
    with io.open(script_fname, 'w', encoding='utf-8') as f:
        f.write(script)


class FileContentsManager(FileManagerMixin, ContentsManager):

    root_dir = Unicode(config=True)

    @default('root_dir')
    def _default_root_dir(self):
        try:
            return self.parent.notebook_dir
        except AttributeError:
            return getcwd()

    save_script = Bool(False, config=True, help='DEPRECATED, use post_save_hook. Will be removed in Notebook 5.0')

    @observe('save_script')
    def _update_save_script(self):
        self.log.warning("""
        `--script` is deprecated and will be removed in notebook 5.0.

        You can trigger nbconvert via pre- or post-save hooks:

            ContentsManager.pre_save_hook
            FileContentsManager.post_save_hook

        A post-save hook has been registered that calls:

            jupyter nbconvert --to script [notebook]

        which behaves similarly to `--script`.
        """)

        self.post_save_hook = _post_save_script

    post_save_hook = Any(None, config=True, allow_none=True,
        help="""Python callable or importstring thereof

        to be called on the path of a file just saved.

        This can be used to process the file on disk,
        such as converting the notebook to a script or HTML via nbconvert.

        It will be called as (all arguments passed by keyword)::

            hook(os_path=os_path, model=model, contents_manager=instance)

        - path: the filesystem path to the file just written
        - model: the model representing the file
        - contents_manager: this ContentsManager instance
        """
    )

    @validate('post_save_hook')
    def _validate_post_save_hook(self, proposal):
        value = proposal['value']
        if isinstance(value, string_types):
            value = import_item(value)
        if not callable(value):
            raise TraitError("post_save_hook must be callable")
        return value

    def run_post_save_hook(self, model, os_path):
        """Run the post-save hook if defined, and log errors"""
        if self.post_save_hook:
            try:
                self.log.debug("Running post-save hook on %s", os_path)
                self.post_save_hook(os_path=os_path, model=model, contents_manager=self)
            except Exception as e:
                self.log.error("Post-save hook failed o-n %s", os_path, exc_info=True)
                raise web.HTTPError(500, u'Unexpected error while running post hook save: %s' % e)

    @validate('root_dir')
    def _validate_root_dir(self, proposal):
        """Do a bit of validation of the root_dir."""
        value = proposal['value']
        if not os.path.isabs(value):
            # If we receive a non-absolute path, make it absolute.
            value = os.path.abspath(value)
        if not os.path.isdir(value):
            raise TraitError("%r is not a directory" % value)
        return value

    @default('checkpoints_class')
    def _checkpoints_class_default(self):
        return FileCheckpoints

    @default('files_handler_class')
    def _files_handler_class_default(self):
        return AuthenticatedFileHandler

    @default('files_handler_params')
    def _files_handler_params_default(self):
        return {'path': self.root_dir}

    def is_hidden(self, path):
        """Does the API style path correspond to a hidden directory or file?

        Parameters
        ----------
        path : string
            The path to check. This is an API path (`/` separated,
            relative to root_dir).

        Returns
        -------
        hidden : bool
            Whether the path exists and is hidden.
        """
        path = path.strip('/')
        os_path = self._get_os_path(path=path)
        return is_hidden(os_path, self.root_dir)

    def file_exists(self, path):
        """Returns True if the file exists, else returns False.

        API-style wrapper for os.path.isfile

        Parameters
        ----------
        path : string
            The relative path to the file (with '/' as separator)

        Returns
        -------
        exists : bool
            Whether the file exists.
        """
        path = path.strip('/')
        os_path = self._get_os_path(path)
        return os.path.isfile(os_path)

    def dir_exists(self, path):
        """Does the API-style path refer to an extant directory?

        API-style wrapper for os.path.isdir

        Parameters
        ----------
        path : string
            The path to check. This is an API path (`/` separated,
            relative to root_dir).

        Returns
        -------
        exists : bool
            Whether the path is indeed a directory.
        """
        path = path.strip('/')
        os_path = self._get_os_path(path=path)
        return os.path.isdir(os_path)

    def exists(self, path):
        """Returns True if the path exists, else returns False.

        API-style wrapper for os.path.exists

        Parameters
        ----------
        path : string
            The API path to the file (with '/' as separator)

        Returns
        -------
        exists : bool
            Whether the target exists.
        """
        path = path.strip('/')
        os_path = self._get_os_path(path=path)
        return exists(os_path)

    def _base_model(self, path):
        """Build the common base of a contents model"""
        os_path = self._get_os_path(path)
        info = os.lstat(os_path)
        try:
            last_modified = tz.utcfromtimestamp(info.st_mtime)
        except (ValueError, OSError):
            # Files can rarely have an invalid timestamp
            # https://github.com/jupyter/notebook/issues/2539
            # https://github.com/jupyter/notebook/issues/2757
            # Use the Unix epoch as a fallback so we don't crash.
            self.log.warning('Invalid mtime %s for %s', info.st_mtime, os_path)
            last_modified = datetime(1970, 1, 1, 0, 0, tzinfo=tz.UTC)

        try:
            created = tz.utcfromtimestamp(info.st_ctime)
        except (ValueError, OSError):  # See above
            self.log.warning('Invalid ctime %s for %s', info.st_ctime, os_path)
            created = datetime(1970, 1, 1, 0, 0, tzinfo=tz.UTC)

        # Create the base model.
        model = {}
        model['name'] = path.rsplit('/', 1)[-1]
        model['path'] = path
        model['last_modified'] = last_modified
        model['created'] = created
        model['content'] = None
        model['format'] = None
        model['mimetype'] = None
        try:
            model['writable'] = os.access(os_path, os.W_OK)
        except OSError:
            self.log.error("Failed to check write permissions on %s", os_path)
            model['writable'] = False
        return model

    def _dir_model(self, path, content=True):
        """Build a model for a directory

        if content is requested, will include a listing of the directory
        """
        os_path = self._get_os_path(path)

        four_o_four = u'directory does not exist: %r' % path

        if not os.path.isdir(os_path):
            raise web.HTTPError(404, four_o_four)
        elif is_hidden(os_path, self.root_dir):
            self.log.info("Refusing to serve hidden directory %r, via 404 Error",
                os_path
            )
            raise web.HTTPError(404, four_o_four)

        model = self._base_model(path)
        model['type'] = 'directory'
        if content:
            model['content'] = contents = []
            os_dir = self._get_os_path(path)
            for name in os.listdir(os_dir):
                try:
                    os_path = os.path.join(os_dir, name)
                except UnicodeDecodeError as e:
                    self.log.warning(
                        "failed to decode filename '%s': %s", name, e)
                    continue

                try:
                    st = os.lstat(os_path)
                except OSError as e:
                    # skip over broken symlinks in listing
                    if e.errno == errno.ENOENT:
                        self.log.warning("%s doesn't exist", os_path)
                    else:
                        self.log.warning("Error stat-ing %s: %s", os_path, e)
                    continue

                if (not stat.S_ISLNK(st.st_mode)
                        and not stat.S_ISREG(st.st_mode)
                        and not stat.S_ISDIR(st.st_mode)):
                    self.log.debug("%s not a regular file", os_path)
                    continue

                if self.should_list(name) and not is_file_hidden(os_path, stat_res=st):
                    contents.append(self.get(
                        path='%s/%s' % (path, name),
                        content=False)
                    )

            model['format'] = 'json'

        return model

    def _file_model(self, path, content=True, format=None):
        """Build a model for a file

        if content is requested, include the file contents.

        format:
          If 'text', the contents will be decoded as UTF-8.
          If 'base64', the raw bytes contents will be encoded as base64.
          If not specified, try to decode as UTF-8, and fall back to base64
        """
        model = self._base_model(path)
        model['type'] = 'file'

        os_path = self._get_os_path(path)
        model['mimetype'] = mimetypes.guess_type(os_path)[0]

        if content:
            content, format = self._read_file(os_path, format)
            if model['mimetype'] is None:
                default_mime = {
                    'text': 'text/plain',
                    'base64': 'application/octet-stream'
                }[format]
                model['mimetype'] = default_mime

            model.update(
                content=content,
                format=format,
            )

        return model

    def _notebook_model(self, path, content=True):
        """Build a notebook model

        if content is requested, the notebook content will be populated
        as a JSON structure (not double-serialized)
        """
        model = self._base_model(path)
        model['type'] = 'notebook'
        if content:
            os_path = self._get_os_path(path)
            nb = self._read_notebook(os_path, as_version=4)
            self.mark_trusted_cells(nb, path)
            model['content'] = nb
            model['format'] = 'json'
            self.validate_notebook_model(model)
        return model

    def get(self, path, content=True, type=None, format=None):
        """ Takes a path for an entity and returns its model

        Parameters
        ----------
        path : str
            the API path that describes the relative path for the target
        content : bool
            Whether to include the contents in the reply
        type : str, optional
            The requested type - 'file', 'notebook', or 'directory'.
            Will raise HTTPError 400 if the content doesn't match.
        format : str, optional
            The requested format for file contents. 'text' or 'base64'.
            Ignored if this returns a notebook or directory model.

        Returns
        -------
        model : dict
            the contents model. If content=True, returns the contents
            of the file or directory as well.
        """
        path = path.strip('/')

        if not self.exists(path):
            raise web.HTTPError(404, u'No such file or directory: %s' % path)

        os_path = self._get_os_path(path)
        if os.path.isdir(os_path):
            if type not in (None, 'directory'):
                raise web.HTTPError(400,
                                u'%s is a directory, not a %s' % (path, type), reason='bad type')
            model = self._dir_model(path, content=content)
        elif type == 'notebook' or (type is None and path.endswith('.ipynb')):
            model = self._notebook_model(path, content=content)
        else:
            if type == 'directory':
                raise web.HTTPError(400,
                                u'%s is not a directory' % path, reason='bad type')
            model = self._file_model(path, content=content, format=format)
        return model

    def _save_directory(self, os_path, model, path=''):
        """create a directory"""
        if is_hidden(os_path, self.root_dir):
            raise web.HTTPError(400, u'Cannot create hidden directory %r' % os_path)
        if not os.path.exists(os_path):
            with self.perm_to_403():
                os.mkdir(os_path)
        elif not os.path.isdir(os_path):
            raise web.HTTPError(400, u'Not a directory: %s' % (os_path))
        else:
            self.log.debug("Directory %r already exists", os_path)

    def save(self, model, path=''):
        """Save the file model and return the model with no content."""
        path = path.strip('/')

        if 'type' not in model:
            raise web.HTTPError(400, u'No file type provided')
        if 'content' not in model and model['type'] != 'directory':
            raise web.HTTPError(400, u'No file content provided')

        os_path = self._get_os_path(path)
        self.log.debug("Saving %s", os_path)

        self.run_pre_save_hook(model=model, path=path)

        try:
            if model['type'] == 'notebook':
                nb = nbformat.from_dict(model['content'])
                self.check_and_sign(nb, path)
                self._save_notebook(os_path, nb)
                # One checkpoint should always exist for notebooks.
                if not self.checkpoints.list_checkpoints(path):
                    self.create_checkpoint(path)
            elif model['type'] == 'file':
                # Missing format will be handled internally by _save_file.
                self._save_file(os_path, model['content'], model.get('format'))
            elif model['type'] == 'directory':
                self._save_directory(os_path, model, path)
            else:
                raise web.HTTPError(400, "Unhandled contents type: %s" % model['type'])
        except web.HTTPError:
            raise
        except Exception as e:
            self.log.error(u'Error while saving file: %s %s', path, e, exc_info=True)
            raise web.HTTPError(500, u'Unexpected error while saving file: %s %s' % (path, e))

        validation_message = None
        if model['type'] == 'notebook':
            self.validate_notebook_model(model)
            validation_message = model.get('message', None)

        model = self.get(path, content=False)
        if validation_message:
            model['message'] = validation_message

        self.run_post_save_hook(model=model, os_path=os_path)

        return model

    def delete_file(self, path):
        """Delete file at path."""
        path = path.strip('/')
        os_path = self._get_os_path(path)
        rm = os.unlink
        if os.path.isdir(os_path):
            listing = os.listdir(os_path)
            # Don't delete non-empty directories.
            # A directory containing only leftover checkpoints is
            # considered empty.
            cp_dir = getattr(self.checkpoints, 'checkpoint_dir', None)
            for entry in listing:
                if entry != cp_dir:
                    raise web.HTTPError(400, u'Directory %s not empty' % os_path)
        elif not os.path.isfile(os_path):
            raise web.HTTPError(404, u'File does not exist: %s' % os_path)

        if os.path.isdir(os_path):
            self.log.debug("Removing directory %s", os_path)
            with self.perm_to_403():
                shutil.rmtree(os_path)
        else:
            self.log.debug("Unlinking file %s", os_path)
            with self.perm_to_403():
                rm(os_path)

    def rename_file(self, old_path, new_path):
        """Rename a file."""
        old_path = old_path.strip('/')
        new_path = new_path.strip('/')
        if new_path == old_path:
            return

        new_os_path = self._get_os_path(new_path)
        old_os_path = self._get_os_path(old_path)

        # Should we proceed with the move?
        if os.path.exists(new_os_path) and not samefile(old_os_path, new_os_path):
            raise web.HTTPError(409, u'File already exists: %s' % new_path)

        # Move the file
        try:
            with self.perm_to_403():
                shutil.move(old_os_path, new_os_path)
        except web.HTTPError:
            raise
        except Exception as e:
            raise web.HTTPError(500, u'Unknown error renaming file: %s %s' % (old_path, e))

    def info_string(self):
        return _("Serving notebooks from local directory: %s") % self.root_dir

    def get_kernel_path(self, path, model=None):
        """Return the initial API path of  a kernel associated with a given notebook"""
        if self.dir_exists(path):
            return path
        if '/' in path:
            parent_dir = path.rsplit('/', 1)[0]
        else:
            parent_dir = ''
        return parent_dir