/usr/include/dolfin/fem/SystemAssembler.h is in libdolfin-dev 2017.2.0.post0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 | // Copyright (C) 2008-2015 Kent-Andre Mardal and Garth N. Wells
//
// This file is part of DOLFIN.
//
// DOLFIN is free software: you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// DOLFIN is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
//
// Modified by Anders Logg 2008-2011
#ifndef __SYSTEM_ASSEMBLER_H
#define __SYSTEM_ASSEMBLER_H
#include <array>
#include <map>
#include <memory>
#include <vector>
#include "DirichletBC.h"
#include "AssemblerBase.h"
namespace ufc
{
class cell;
class cell_integral;
class exterior_facet_integral;
class interior_facet_integral;
}
namespace dolfin
{
// Forward declarations
template<typename T> class ArrayView;
class Cell;
class Facet;
class Form;
class GenericDofMap;
class GenericMatrix;
class GenericVector;
template<typename T> class MeshFunction;
class UFC;
/// This class provides an assembler for systems of the form Ax =
/// b. It differs from the default DOLFIN assembler in that it
/// applies boundary conditions at the time of assembly, which
/// preserves any symmetries in A.
class SystemAssembler : public AssemblerBase
{
public:
/// Constructor
SystemAssembler(std::shared_ptr<const Form> a,
std::shared_ptr<const Form> L,
std::vector<std::shared_ptr<const DirichletBC>> bcs);
/// Assemble system (A, b)
void assemble(GenericMatrix& A, GenericVector& b);
/// Assemble matrix A
void assemble(GenericMatrix& A);
/// Assemble vector b
void assemble(GenericVector& b);
/// Assemble system (A, b) for (negative) increment dx, where x =
/// x0 - dx is solution to system a == -L subject to bcs.
/// Suitable for use inside a (quasi-)Newton solver.
void assemble(GenericMatrix& A, GenericVector& b, const GenericVector& x0);
/// Assemble rhs vector b for (negative) increment dx, where x =
/// x0 - dx is solution to system a == -L subject to bcs.
/// Suitable for use inside a (quasi-)Newton solver.
void assemble(GenericVector& b, const GenericVector& x0);
private:
// Class to hold temporary data
class Scratch
{
public:
Scratch(const Form& a, const Form& L);
~Scratch();
std::array<std::vector<double>, 2> Ae;
};
// Check form arity
static void check_arity(std::shared_ptr<const Form> a,
std::shared_ptr<const Form> L);
// Check if _bcs[bc_index] is part of FunctionSpace fs
bool check_functionspace_for_bc
(std::shared_ptr<const FunctionSpace> fs, std::size_t bc_index);
// Assemble system
void assemble(GenericMatrix* A, GenericVector* b,
const GenericVector* x0);
// Bilinear and linear forms
std::shared_ptr<const Form> _a, _l;
// Boundary conditions
std::vector<std::shared_ptr<const DirichletBC>> _bcs;
static void cell_wise_assembly(
std::array<GenericTensor*, 2>& tensors,
std::array<UFC*, 2>& ufc,
Scratch& data,
const std::vector<DirichletBC::Map>& boundary_values,
std::shared_ptr<const MeshFunction<std::size_t>> cell_domains,
std::shared_ptr<const MeshFunction<std::size_t>> exterior_facet_domains);
static void facet_wise_assembly(
std::array<GenericTensor*, 2>& tensors,
std::array<UFC*, 2>& ufc,
Scratch& data,
const std::vector<DirichletBC::Map>& boundary_values,
std::shared_ptr<const MeshFunction<std::size_t>> cell_domains,
std::shared_ptr<const MeshFunction<std::size_t>> exterior_facet_domains,
std::shared_ptr<const MeshFunction<std::size_t>> interior_facet_domains);
// Compute exterior facet (and possibly connected cell)
// contribution
static void compute_exterior_facet_tensor(
std::array<std::vector<double>, 2>& Ae,
std::array<UFC*, 2>& ufc,
ufc::cell& ufc_cell,
std::vector<double>& coordinate_dofs,
const std::array<bool, 2>& tensor_required_cell,
const std::array<bool, 2>& tensor_required_facet,
const Cell& cell,
const Facet& facet,
const std::array<const ufc::cell_integral*, 2>& cell_integrals,
const std::array<const ufc::exterior_facet_integral*, 2>& exterior_facet_integrals,
const bool compute_cell_tensor);
// Compute interior facet (and possibly connected cell)
// contribution
static void compute_interior_facet_tensor(
std::array<UFC*, 2>& ufc,
std::array<ufc::cell, 2>& ufc_cell,
std::array<std::vector<double>, 2>& coordinate_dofs,
const std::array<bool, 2>& tensor_required_cell,
const std::array<bool, 2>& tensor_required_facet,
const std::array<Cell, 2>& cell,
const std::array<std::size_t, 2>& local_facet,
const bool facet_owner,
const std::array<const ufc::cell_integral*, 2>& cell_integrals,
const std::array<const ufc::interior_facet_integral*, 2>& interior_facet_integrals,
const std::array<std::size_t, 2>& matrix_size,
const std::size_t vector_size,
const std::array<bool, 2> compute_cell_tensor);
// Modified matrix insertion for case when rhs has facet integrals
// and lhs has no facet integrals
static void matrix_block_add(
GenericTensor& tensor,
std::vector<double>& Ae,
std::vector<double>& macro_A,
const std::array<bool, 2>& add_local_tensor,
const std::array<std::vector<ArrayView<const la_index>>, 2>& cell_dofs);
static void apply_bc(double* A, double* b,
const std::vector<DirichletBC::Map>& boundary_values,
const ArrayView<const dolfin::la_index>& global_dofs0,
const ArrayView<const dolfin::la_index>& global_dofs1);
// Return true if cell has an Dirichlet/essential boundary
// condition applied
static bool has_bc(const DirichletBC::Map& boundary_values,
const ArrayView<const dolfin::la_index>& dofs);
// Return true if element matrix is required
static bool
cell_matrix_required(const GenericTensor* A,
const void* integral,
const std::vector<DirichletBC::Map>& boundary_values,
const ArrayView<const dolfin::la_index>& dofs);
};
}
#endif
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