/usr/include/dolfin/la/TpetraVector.h is in libdolfin-dev 2017.2.0.post0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 | // Copyright (C) 2014
//
// This file is part of DOLFIN.
//
// DOLFIN is free software: you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// DOLFIN is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
//
#ifndef __TPETRA_VECTOR_H
#define __TPETRA_VECTOR_H
#ifdef HAS_TRILINOS
#include <cstdint>
#include <map>
#include <memory>
#include <string>
#include <unordered_map>
#include <utility>
#include <Teuchos_GlobalMPISession.hpp>
#include <Teuchos_oblackholestream.hpp>
#include <Tpetra_DefaultPlatform.hpp>
#include <Tpetra_MultiVector.hpp>
#include <Tpetra_Version.hpp>
#include <dolfin/common/types.h>
#include "GenericVector.h"
namespace dolfin
{
template<typename T> class Array;
/// This class provides a simple vector class based on Tpetra. It
/// is a wrapper for Teuchos::RCP<Tpetra::MultiVector> implementing
/// the GenericVector interface.
///
/// The interface is intentionally simple. For advanced usage,
/// access the Teuchos::RCP<Tpetra::MultiVector> using the function
/// vec() and use the standard Tpetra interface.
class TpetraVector : public GenericVector
{
public:
/// Node type
typedef Tpetra::MultiVector<>::node_type node_type;
/// TpetraVector map type (local index, global index)
typedef Tpetra::Map<int, dolfin::la_index, node_type> map_type;
/// TpetraVector vector type (scalar, local index, global index, node)
typedef Tpetra::MultiVector<double, int, dolfin::la_index, node_type>
vector_type;
/// Create empty vector
TpetraVector(MPI_Comm comm=MPI_COMM_WORLD);
/// Create vector of size N
TpetraVector(MPI_Comm comm, std::size_t N);
/// Copy constructor
TpetraVector(const TpetraVector& x);
/// Create vector wrapper of Tpetra Vec pointer
//explicit TpetraVector(Teuchos::RCP<vector_type> x);
/// Destructor
virtual ~TpetraVector();
//--- Implementation of the GenericTensor interface ---
/// Set all entries to zero and keep any sparse structure
virtual void zero();
/// Finalize assembly of tensor
virtual void apply(std::string mode);
/// Return MPI communicator
virtual MPI_Comm mpi_comm() const;
/// Return informal string representation (pretty-print)
virtual std::string str(bool verbose) const;
//--- Implementation of the GenericVector interface ---
/// Return copy of vector
virtual std::shared_ptr<GenericVector> copy() const;
/// Initialize vector to global size N
virtual void init(std::size_t N);
/// Initialize vector with given ownership range
virtual void init(std::pair<std::size_t, std::size_t> range);
/// Initialize vector with given ownership range and with ghost
/// values
virtual void init(std::pair<std::size_t, std::size_t> range,
const std::vector<std::size_t>& local_to_global_map,
const std::vector<la_index>& ghost_indices);
// Bring init function from GenericVector into scope
using GenericVector::init;
/// Return true if vector is empty
virtual bool empty() const;
/// Return size of vector
virtual std::size_t size() const;
/// Return local size of vector
virtual std::size_t local_size() const;
/// Return ownership range of a vector
virtual std::pair<std::int64_t, std::int64_t> local_range() const;
/// Determine whether global vector index is owned by this process
virtual bool owns_index(std::size_t i) const;
/// Get block of values using global indices (all values must be
/// owned by local process, ghosts cannot be accessed)
virtual void get(double* block, std::size_t m,
const dolfin::la_index* rows) const;
/// Get block of values using local indices
virtual void get_local(double* block, std::size_t m,
const dolfin::la_index* rows) const;
/// Set block of values using global indices
virtual void set(const double* block, std::size_t m,
const dolfin::la_index* rows);
/// Set block of values using local indices
virtual void set_local(const double* block, std::size_t m,
const dolfin::la_index* rows);
/// Add block of values using global indices
virtual void add(const double* block, std::size_t m,
const dolfin::la_index* rows);
/// Add block of values using local indices
virtual void add_local(const double* block, std::size_t m,
const dolfin::la_index* rows);
/// Get all values on local process
virtual void get_local(std::vector<double>& values) const;
/// Set all values on local process
virtual void set_local(const std::vector<double>& values);
/// Add values to each entry on local process
virtual void add_local(const Array<double>& values);
/// Gather entries (given by global indices) into local
/// (MPI_COMM_SELF) vector x. Provided x must be empty or of
/// correct dimension (same as provided indices). This operation
/// is collective
virtual void gather(GenericVector& y,
const std::vector<dolfin::la_index>& indices) const;
/// Gather entries (given by global indices) into x. This
/// operation is collective
virtual void gather(std::vector<double>& x,
const std::vector<dolfin::la_index>& indices) const;
/// Gather all entries into x on process 0.
/// This operation is collective
virtual void gather_on_zero(std::vector<double>& x) const;
/// Add multiple of given vector (AXPY operation)
virtual void axpy(double a, const GenericVector& x);
/// Replace all entries in the vector by their absolute values
virtual void abs();
/// Return inner product with given vector
virtual double inner(const GenericVector& v) const;
/// Return norm of vector
virtual double norm(std::string norm_type) const;
/// Return minimum value of vector
virtual double min() const;
/// Return maximum value of vector
virtual double max() const;
/// Return sum of values of vector
virtual double sum() const;
/// Return sum of selected rows in vector
virtual double sum(const Array<std::size_t>& rows) const;
/// Multiply vector by given number
virtual const TpetraVector& operator*= (double a);
/// Multiply vector by another vector pointwise
virtual const TpetraVector& operator*= (const GenericVector& x);
/// Divide vector by given number
virtual const TpetraVector& operator/= (double a);
/// Add given vector
virtual const TpetraVector& operator+= (const GenericVector& x);
/// Add number to all components of a vector
virtual const TpetraVector& operator+= (double a);
/// Subtract given vector
virtual const TpetraVector& operator-= (const GenericVector& x);
/// Subtract number from all components of a vector
virtual const TpetraVector& operator-= (double a);
/// Assignment operator
virtual const GenericVector& operator= (const GenericVector& x);
/// Assignment operator
virtual const TpetraVector& operator= (double a);
/// Update ghost values in vector
virtual void update_ghost_values();
//--- Special functions ---
/// Return linear algebra backend factory
virtual GenericLinearAlgebraFactory& factory() const;
//--- Special Tpetra functions ---
/// Return pointer to Tpetra vector object
Teuchos::RCP<vector_type> vec() const;
/// Assignment operator
const TpetraVector& operator= (const TpetraVector& x);
/// output map for debugging
static void mapdump(Teuchos::RCP<const map_type> xmap,
const std::string desc);
/// Dump x.map and ghost_map for debugging
void mapdump(const std::string desc);
friend class TpetraMatrix;
private:
// Initialise Tpetra vector
void _init(std::pair<std::int64_t, std::int64_t> range,
const std::vector<dolfin::la_index>& local_to_global);
// Tpetra multivector - actually a view into the ghosted vector,
// below
Teuchos::RCP<vector_type> _x;
// Tpetra multivector with extra rows for ghost values
Teuchos::RCP<vector_type> _x_ghosted;
// MPI Communicator
Teuchos::RCP<const Teuchos::MpiComm<int>> _comm;
};
}
#endif
#endif
|