libotb-dev 6.4.0+dfsg-1 / usr / include / OTB-6.4 / otbNormalBayesMachineLearningModel.txx

/*
 * Copyright (C) 2005-2017 Centre National d'Etudes Spatiales (CNES)
 *
 * This file is part of Orfeo Toolbox
 *
 *     https://www.orfeo-toolbox.org/
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

#ifndef otbNormalBayesMachineLearningModel_txx
#define otbNormalBayesMachineLearningModel_txx

#include <fstream>
#include "itkMacro.h"
#include "otbNormalBayesMachineLearningModel.h"
#include "otbOpenCVUtils.h"

namespace otb
{

template <class TInputValue, class TOutputValue>
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::NormalBayesMachineLearningModel() :
#ifdef OTB_OPENCV_3
  m_NormalBayesModel(cv::ml::NormalBayesClassifier::create())
#else
 m_NormalBayesModel (new CvNormalBayesClassifier)
#endif 
{
}


template <class TInputValue, class TOutputValue>
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::~NormalBayesMachineLearningModel()
{
#ifndef OTB_OPENCV_3
  delete m_NormalBayesModel;
#endif
}

/** Train the machine learning model */
template <class TInputValue, class TOutputValue>
void
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::Train()
{
  //convert listsample to opencv matrix
  cv::Mat samples;
  otb::ListSampleToMat<InputListSampleType>(this->GetInputListSample(), samples);

  cv::Mat labels;
  otb::ListSampleToMat<TargetListSampleType>(this->GetTargetListSample(),labels);

#ifdef OTB_OPENCV_3
  cv::Mat var_type = cv::Mat(this->GetInputListSample()->GetMeasurementVectorSize() + 1, 1, CV_8U );
  var_type.setTo(cv::Scalar(CV_VAR_NUMERICAL) ); // all inputs are numerical
  var_type.at<uchar>(this->GetInputListSample()->GetMeasurementVectorSize(), 0) = CV_VAR_CATEGORICAL;

  m_NormalBayesModel->train(cv::ml::TrainData::create(
    samples,
    cv::ml::ROW_SAMPLE,
    labels,
    cv::noArray(),
    cv::noArray(),
    cv::noArray(),
    var_type));
#else
  m_NormalBayesModel->train(samples,labels,cv::Mat(),cv::Mat(),false);
#endif
}

template <class TInputValue, class TOutputValue>
typename NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::TargetSampleType
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::DoPredict(const InputSampleType & input, ConfidenceValueType *quality) const
{
  TargetSampleType target;

  //convert listsample to Mat
  cv::Mat sample;

  otb::SampleToMat<InputSampleType>(input,sample);

  cv::Mat missing  = cv::Mat(1,input.Size(), CV_8U );
  missing.setTo(0);
  double result = m_NormalBayesModel->predict(sample);

  target[0] = static_cast<TOutputValue>(result);

  if (quality != ITK_NULLPTR)
    {
    if (!this->HasConfidenceIndex())
      {
      itkExceptionMacro("Confidence index not available for this classifier !");
      }
    }
  return target;
}

template <class TInputValue, class TOutputValue>
void
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::Save(const std::string & filename, const std::string & name)
{
#ifdef OTB_OPENCV_3
  cv::FileStorage fs(filename, cv::FileStorage::WRITE);
  fs << (name.empty() ? m_NormalBayesModel->getDefaultName() : cv::String(name)) << "{";
  m_NormalBayesModel->write(fs);
  fs << "}";
  fs.release();
#else
  if (name == "")
    m_NormalBayesModel->save(filename.c_str(), ITK_NULLPTR);
  else
    m_NormalBayesModel->save(filename.c_str(), name.c_str());
#endif
}

template <class TInputValue, class TOutputValue>
void
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::Load(const std::string & filename, const std::string & name)
{
#ifdef OTB_OPENCV_3
  cv::FileStorage fs(filename, cv::FileStorage::READ);
  m_NormalBayesModel->read(name.empty() ? fs.getFirstTopLevelNode() : fs[name]);
#else
  if (name == "")
    m_NormalBayesModel->load(filename.c_str(), ITK_NULLPTR);
  else
    m_NormalBayesModel->load(filename.c_str(), name.c_str());
#endif
}

template <class TInputValue, class TOutputValue>
bool
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::CanReadFile(const std::string & file)
{
  std::ifstream ifs;
  ifs.open(file.c_str());

  if(!ifs)
  {
    std::cerr<<"Could not read file "<<file<<std::endl;
    return false;
  }

  while (!ifs.eof())
  {
    std::string line;
    std::getline(ifs, line);

    if (line.find(CV_TYPE_NAME_ML_NBAYES) != std::string::npos
#ifdef OTB_OPENCV_3
        || line.find(m_NormalBayesModel->getDefaultName()) != std::string::npos
#endif
        )
    {
       //std::cout<<"Reading a "<<CV_TYPE_NAME_ML_NBAYES<<" model"<<std::endl;
       return true;
    }
  }
  ifs.close();
  return false;
}

template <class TInputValue, class TOutputValue>
bool
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::CanWriteFile(const std::string & itkNotUsed(file))
{
  return false;
}

template <class TInputValue, class TOutputValue>
void
NormalBayesMachineLearningModel<TInputValue,TOutputValue>
::PrintSelf(std::ostream& os, itk::Indent indent) const
{
  // Call superclass implementation
  Superclass::PrintSelf(os,indent);
}

} //end namespace otb

#endif