/usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt is in r-bioc-biostrings 2.46.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | 585 chrY 34821 84821 2 N 50000 contig no
586 chrY 171384 201384 6 N 30000 contig no
592 chrY 967557 1017557 14 N 50000 contig no
593 chrY 1054113 1104113 16 N 50000 contig no
594 chrY 1184234 1274234 19 N 90000 contig no
9 chrY 2028238 2128238 29 N 100000 contig no
653 chrY 8974955 9024955 91 N 50000 clone no
10 chrY 9301322 9901322 96 N 600000 clone no
83 chrY 10714553 11214553 104 N 500000 clone no
10 chrY 11253954 11653954 106 N 400000 centromere no
678 chrY 12208578 12308578 111 N 100000 centromere no
755 chrY 22310816 22360816 201 N 50000 clone no
1 chrY 27228749 57228749 246 N 30000000 heterochromatin no
1022 chrY 57327044 57377044 248 N 50000 clone no
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