This file is indexed.

/usr/lib/R/site-library/dplyr/include/dplyr/VectorVisitorImpl.h is in r-cran-dplyr 0.7.4-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
#ifndef dplyr_VectorVisitor_Impl_H
#define dplyr_VectorVisitor_Impl_H

#include <tools/collapse.h>
#include <tools/utils.h>

#include <dplyr/CharacterVectorOrderer.h>
#include <dplyr/comparisons.h>
#include <dplyr/VectorVisitor.h>
#include <tools/encoding.h>

namespace dplyr {

template <int RTYPE> std::string VectorVisitorType();
template <> inline std::string VectorVisitorType<INTSXP>() {
  return "integer";
}
template <> inline std::string VectorVisitorType<REALSXP>() {
  return "numeric";
}
template <> inline std::string VectorVisitorType<LGLSXP>() {
  return "logical";
}
template <> inline std::string VectorVisitorType<STRSXP>() {
  return "character";
}
template <> inline std::string VectorVisitorType<CPLXSXP>() {
  return "complex";
}
template <> inline std::string VectorVisitorType<VECSXP>() {
  return "list";
}

/**
 * Implementations
 */
template <int RTYPE>
class VectorVisitorImpl : public VectorVisitor {
  typedef comparisons<RTYPE> compare;

public:
  typedef Rcpp::Vector<RTYPE> VECTOR;

  /**
   * The type of data : int, double, SEXP, Rcomplex
   */
  typedef typename Rcpp::traits::storage_type<RTYPE>::type STORAGE;

  /**
   * Hasher for that type of data
   */
  typedef boost::hash<STORAGE> hasher;

  VectorVisitorImpl(const VECTOR& vec_) : vec(vec_) {}

  /**
   * implementations
   */
  size_t hash(int i) const {
    return hash_fun(vec[i]);
  }
  inline bool equal(int i, int j) const {
    return compare::equal_or_both_na(vec[i], vec[j]);
  }

  inline bool less(int i, int j) const {
    return compare::is_less(vec[i], vec[j]);
  }

  inline bool equal_or_both_na(int i, int j) const {
    return compare::equal_or_both_na(vec[i], vec[j]);
  }

  inline bool greater(int i, int j) const {
    return compare::is_greater(vec[i], vec[j]);
  }

  inline std::string get_r_type() const {
    return VectorVisitorType<RTYPE>();
  }

  int size() const {
    return vec.size();
  }

  bool is_na(int i) const {
    return VECTOR::is_na(vec[i]);
  }

protected:
  VECTOR vec;
  hasher hash_fun;

};

class FactorVisitor : public VectorVisitorImpl<INTSXP> {
  typedef comparisons<STRSXP> string_compare;

public:
  typedef VectorVisitorImpl<INTSXP> Parent;

  FactorVisitor(const IntegerVector& vec_) : Parent(vec_) {
    levels = get_levels(vec);
    levels_ptr = Rcpp::internal::r_vector_start<STRSXP>(levels);
  }

  inline bool equal(int i, int j) const {
    return vec[i] == vec[j];
  }

  inline bool less(int i, int j) const {
    return
      string_compare::is_less(
        vec[i] < 0 ? NA_STRING : levels_ptr[vec[i]],
        vec[j] < 0 ? NA_STRING : levels_ptr[vec[j]]
      );
  }

  inline bool greater(int i, int j) const {
    return
      string_compare::is_greater(
        vec[i] < 0 ? NA_STRING : levels_ptr[vec[i]],
        vec[j] < 0 ? NA_STRING : levels_ptr[vec[j]]
      );
  }

  inline std::string get_r_type() const {
    return get_single_class(Parent::vec);
  }

private:
  CharacterVector levels;
  SEXP* levels_ptr;
};


template <>
class VectorVisitorImpl<STRSXP> : public VectorVisitor {
public:

  VectorVisitorImpl(const CharacterVector& vec_) :
    vec(reencode_char(vec_)), has_orders(false)
  {}

  size_t hash(int i) const {
    return reinterpret_cast<size_t>(get_item(i));
  }
  inline bool equal(int i, int j) const {
    return equal_or_both_na(i, j);
  }

  inline bool less(int i, int j) const {
    provide_orders();
    return orders[i] < orders[j];
  }

  inline bool equal_or_both_na(int i, int j) const {
    return get_item(i) == get_item(j);
  }

  inline bool greater(int i, int j) const {
    provide_orders();
    return orders[i] > orders[j];
  }

  inline std::string get_r_type() const {
    return VectorVisitorType<STRSXP>();
  }

  int size() const {
    return vec.size();
  }

  bool is_na(int i) const {
    return CharacterVector::is_na(vec[i]);
  }

private:
  SEXP get_item(const int i) const {
    return static_cast<SEXP>(vec[i]);
  }

  void provide_orders() const {
    if (has_orders)
      return;

    orders = CharacterVectorOrderer(vec).get();
    has_orders = true;
  }

private:
  CharacterVector vec;
  mutable IntegerVector orders;
  mutable bool has_orders;

};

}

#endif