This file is indexed.

/usr/lib/R/library/mgcv/help/AnIndex is in r-cran-mgcv 1.8-23-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
mgcv-package	mgcv-package
adaptive.smooth	smooth.construct.ad.smooth.spec
AIC.gam	logLik.gam
anova.gam	anova.gam
b.spline	smooth.construct.bs.smooth.spec
bam	bam
bam.update	bam.update
bandchol	bandchol
betar	Beta
bug.reports.mgcv	bug.reports.mgcv
choose.k	choose.k
coef.pdIdnot	pdIdnot
coef.pdTens	pdTens
columb	columb
columb.polys	columb
concurvity	concurvity
corMatrix.pdIdnot	pdIdnot
cox.ph	coxph
cox.pht	coxpht
cSplineDes	cSplineDes
cubic.regression.spline	smooth.construct.cr.smooth.spec
cyclic.cubic.spline	smooth.construct.cr.smooth.spec
cyclic.p.spline	smooth.construct.ps.smooth.spec
dDeta	dDeta
Dim.pdIdnot	pdIdnot
Duchon.spline	smooth.construct.ds.smooth.spec
exclude.too.far	exclude.too.far
extract.lme.cov	extract.lme.cov
extract.lme.cov2	extract.lme.cov
factor.smooth.interaction	smooth.construct.fs.smooth.spec
family.mgcv	family.mgcv
fix.family.link	fix.family.link
fix.family.ls	fix.family.link
fix.family.qf	fix.family.link
fix.family.rd	fix.family.link
fix.family.var	fix.family.link
fixDependence	fixDependence
formula.gam	formula.gam
formXtViX	formXtViX
fs.boundary	fs.test
fs.test	fs.test
full.score	full.score
function.predictors	linear.functional.terms
gam	gam
gam.check	gam.check
gam.control	gam.control
gam.convergence	gam.convergence
gam.fit	gam.fit
gam.fit3	gam.fit3
gam.fit5.post.proc	gam.fit5.post.proc
gam.models	gam.models
gam.outer	gam.outer
gam.performance	gam.convergence
gam.reparam	gam.reparam
gam.scale	gam.scale
gam.selection	gam.selection
gam.side	gam.side
gam.vcomp	gam.vcomp
gam2derivative	gam2objective
gam2objective	gam2objective
gamlss.etamu	gamlss.etamu
gamlss.gH	gamlss.gH
gamm	gamm
gamObject	gamObject
gamSim	gamSim
gaulss	gaulss
get.var	get.var
gevlss	gevlss
gp.smooth	smooth.construct.gp.smooth.spec
identifiability	identifiability
in.out	in.out
influence.gam	influence.gam
initial.sp	initial.sp
inSide	inSide
interpret.gam	interpret.gam
jagam	jagam
ldetS	ldetS
ldTweedie	ldTweedie
linear.functional.terms	linear.functional.terms
logDet.pdIdnot	pdIdnot
logLik.gam	logLik.gam
ls.size	ls.size
magic	magic
magic.post.proc	magic.post.proc
mgcv	mgcv-package
mgcv.FAQ	mgcv-FAQ
mgcv.package	mgcv-package
mgcv.parallel	mgcv-parallel
mini.roots	mini.roots
missing.data	missing.data
model.matrix.gam	model.matrix.gam
mono.con	mono.con
mrf	smooth.construct.mrf.smooth.spec
mroot	mroot
multinom	multinom
mvn	mvn
nb	negbin
negbin	negbin
new.name	new.name
notExp	notExp
notExp2	notExp2
notLog	notExp
notLog2	notExp2
null.space.dimension	null.space.dimension
ocat	ocat
one.se.rule	one.se.rule
ordered.categorical	ocat
p.spline	smooth.construct.ps.smooth.spec
pcls	pcls
pdConstruct.pdIdnot	pdIdnot
pdConstruct.pdTens	pdTens
pdFactor.pdIdnot	pdIdnot
pdFactor.pdTens	pdTens
pdIdnot	pdIdnot
pdMatrix.pdIdnot	pdIdnot
pdMatrix.pdTens	pdTens
pdTens	pdTens
pen.edf	pen.edf
persp.gam	vis.gam
place.knots	place.knots
plot.gam	plot.gam
polys.plot	polys.plot
predict.bam	predict.bam
predict.gam	predict.gam
Predict.matrix	Predict.matrix
Predict.matrix.Bspline.smooth	smooth.construct.bs.smooth.spec
Predict.matrix.cr.smooth	Predict.matrix.cr.smooth
Predict.matrix.cs.smooth	Predict.matrix.cr.smooth
Predict.matrix.cyclic.smooth	Predict.matrix.cr.smooth
Predict.matrix.duchon.spline	smooth.construct.ds.smooth.spec
Predict.matrix.fs.interaction	smooth.construct.fs.smooth.spec
Predict.matrix.gp.smooth	smooth.construct.gp.smooth.spec
Predict.matrix.mrf.smooth	smooth.construct.mrf.smooth.spec
Predict.matrix.pspline.smooth	Predict.matrix.cr.smooth
Predict.matrix.random.effect	smooth.construct.re.smooth.spec
Predict.matrix.sf	Predict.matrix.soap.film
Predict.matrix.soap.film	Predict.matrix.soap.film
Predict.matrix.sos.smooth	smooth.construct.sos.smooth.spec
Predict.matrix.sw	Predict.matrix.soap.film
Predict.matrix.t2.smooth	Predict.matrix.cr.smooth
Predict.matrix.tensor.smooth	Predict.matrix.cr.smooth
Predict.matrix.tprs.smooth	Predict.matrix.cr.smooth
Predict.matrix.ts.smooth	Predict.matrix.cr.smooth
Predict.matrix2	Predict.matrix
PredictMat	smoothCon
print.anova.gam	anova.gam
print.gam	print.gam
print.summary.gam	summary.gam
qq.gam	qq.gam
random.effects	random.effects
residuals.gam	residuals.gam
rig	rig
rmvn	rmvn
Rrank	Rrank
rTweedie	rTweedie
s	s
scat	scat
sdiag	sdiag
sdiag<-	sdiag
signal.regression	linear.functional.terms
sim2jam	jagam
single.index	single.index
Sl.initial.repara	Sl.initial.repara
Sl.repara	Sl.repara
Sl.setup	Sl.setup
slanczos	slanczos
smooth.construct	smooth.construct
smooth.construct.ad.smooth.spec	smooth.construct.ad.smooth.spec
smooth.construct.bs.smooth.spec	smooth.construct.bs.smooth.spec
smooth.construct.cc.smooth.spec	smooth.construct.cr.smooth.spec
smooth.construct.cp.smooth.spec	smooth.construct.ps.smooth.spec
smooth.construct.cr.smooth.spec	smooth.construct.cr.smooth.spec
smooth.construct.cs.smooth.spec	smooth.construct.cr.smooth.spec
smooth.construct.ds.smooth.spec	smooth.construct.ds.smooth.spec
smooth.construct.fs.smooth.spec	smooth.construct.fs.smooth.spec
smooth.construct.gp.smooth.spec	smooth.construct.gp.smooth.spec
smooth.construct.mrf.smooth.spec	smooth.construct.mrf.smooth.spec
smooth.construct.ps.smooth.spec	smooth.construct.ps.smooth.spec
smooth.construct.re.smooth.spec	smooth.construct.re.smooth.spec
smooth.construct.sf.smooth.spec	smooth.construct.so.smooth.spec
smooth.construct.so.smooth.spec	smooth.construct.so.smooth.spec
smooth.construct.sos.smooth.spec	smooth.construct.sos.smooth.spec
smooth.construct.sw.smooth.spec	smooth.construct.so.smooth.spec
smooth.construct.t2.smooth.spec	smooth.construct.t2.smooth.spec
smooth.construct.tensor.smooth.spec	smooth.construct.tensor.smooth.spec
smooth.construct.tp.smooth.spec	smooth.construct.tp.smooth.spec
smooth.construct.ts.smooth.spec	smooth.construct.tp.smooth.spec
smooth.construct2	smooth.construct
smooth.terms	smooth.terms
smooth2random	smooth2random
smoothCon	smoothCon
soap	smooth.construct.so.smooth.spec
solve.pdIdnot	pdIdnot
sp.vcov	sp.vcov
spasm.construct	spasm.construct
spasm.smooth	spasm.construct
spasm.sp	spasm.construct
Spherical.Spline	smooth.construct.sos.smooth.spec
step.gam	step.gam
summary.gam	summary.gam
summary.pdIdnot	pdIdnot
summary.pdTens	pdTens
t.scaled	scat
t2	t2
te	te
tensor.prod.model.matrix	tensor.prod.model.matrix
tensor.prod.penalties	tensor.prod.model.matrix
ti	te
totalPenaltySpace	totalPenaltySpace
tprs	smooth.construct.tp.smooth.spec
trichol	trichol
trind.generator	trind.generator
tw	Tweedie
Tweedie	Tweedie
uniquecombs	uniquecombs
user.defined.smooth	smooth.construct
vcov.gam	vcov.gam
vis.gam	vis.gam
ziP	ziP
ziplss	ziplss