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/usr/share/doc/snort-mysql/README.Maintainer is in snort-mysql 2.9.2-3ubuntu1.

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#
# files modified outside the debian directory
#
snort-lib:
	* Activated alert_syslog LOG_AUTH LOG_ALERT
	* Activated output log_tcpdump snort.log # easier for logrotate
	* Activated preprocessor defrag
	* Commented out the HOME_NET variable - this will be set in
	  snort-startup-script.
	* Commented out the DNS_SERVER variable. What's the benefit?
	* Added 'include local-first' as first include and
	  'include local-last' as last include for user-specific
          extensions.
	* Commented out backdoor-lib completely. Too many false positives.
	* Commented out ping-lib completely. Too many false positives.

I commented out the following detections as they either generated too many
false positives or generate too much noise for harmless things like 
traceroutes or nmap fingerprint attempts. (marked by s/^/#debian#/)
scan-lib:
 "detect fingerprinting attempts"
 "Windows Traceroutes"
 "Standard Traceroutes"
 "dst port 8080" # http proxy