This file is indexed.

/usr/share/doc/mia-2.0/libdoc/classC2DMultiImageNonrigidRegister.html is in libmia-2.0-doc 2.0.13-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.6"/>
<title>C2DMultiImageNonrigidRegister Class Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<!-- end header part -->
<!-- Generated by Doxygen 1.8.6 -->
  <div id="navrow1" class="tabs">
    <ul class="tablist">
      <li><a href="index.html"><span>Main&#160;Page</span></a></li>
      <li><a href="pages.html"><span>Related&#160;Pages</span></a></li>
      <li><a href="modules.html"><span>Modules</span></a></li>
      <li class="current"><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
      <li><a href="files.html"><span>Files</span></a></li>
    </ul>
  </div>
  <div id="navrow2" class="tabs2">
    <ul class="tablist">
      <li><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
      <li><a href="classes.html"><span>Data&#160;Structure&#160;Index</span></a></li>
      <li><a href="hierarchy.html"><span>Class&#160;Hierarchy</span></a></li>
      <li><a href="functions.html"><span>Data&#160;Fields</span></a></li>
    </ul>
  </div>
</div><!-- top -->
<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a>  </div>
  <div class="headertitle">
<div class="title">C2DMultiImageNonrigidRegister Class Reference<div class="ingroups"><a class="el" href="group__registration.html">Image Registration and Transformation</a></div></div>  </div>
</div><!--header-->
<div class="contents">

<p>A 2D non-rigid registration class for time-marching PDE based registration.  
 <a href="classC2DMultiImageNonrigidRegister.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="2d_2register_8hh_source.html">mia/2d/register.hh</a>&gt;</code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a14374040773dafd739b612051da99342"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC2DMultiImageNonrigidRegister.html#a14374040773dafd739b612051da99342">C2DMultiImageRegister</a> (size_t start_size, size_t max_iter, <a class="el" href="group__registration.html#gaba09cd418d361a962093c7ce18647760">C2DRegModel</a> &amp;model, <a class="el" href="classC2DRegTimeStep.html">C2DRegTimeStep</a> &amp;time_step, <a class="el" href="group__registration.html#gad5b721e5c2ab2306fa7c812483e964ef">C2DTransformCreator</a> &amp;trans_factory, float outer_epsilon)</td></tr>
<tr class="separator:a14374040773dafd739b612051da99342"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad3c2258d95ab95ed18c5dd081fc473d9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__registration.html#ga9f4372120670271190100ff624acb536">P2DTransformation</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC2DMultiImageNonrigidRegister.html#ad3c2258d95ab95ed18c5dd081fc473d9">operator()</a> (C2DImageFatCostList &amp;cost, <a class="el" href="2d_2interpolator_8hh.html#adc4b05bca3ac9028ff7b87bbffce65da">P2DInterpolatorFactory</a> ipf)</td></tr>
<tr class="separator:ad3c2258d95ab95ed18c5dd081fc473d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A 2D non-rigid registration class for time-marching PDE based registration. </p>
<p>The 2D non-rigid image registration class. This class allows the combination of various image cost functions, provides multi-level registration and the use of various PDE models (depending on the provided plug-ins. </p>

<p>Definition at line <a class="el" href="2d_2register_8hh_source.html#l00041">41</a> of file <a class="el" href="2d_2register_8hh_source.html">2d/register.hh</a>.</p>
</div><h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="a14374040773dafd739b612051da99342"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">C2DMultiImageNonrigidRegister::C2DMultiImageRegister </td>
          <td>(</td>
          <td class="paramtype">size_t&#160;</td>
          <td class="paramname"><em>start_size</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">size_t&#160;</td>
          <td class="paramname"><em>max_iter</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="group__registration.html#gaba09cd418d361a962093c7ce18647760">C2DRegModel</a> &amp;&#160;</td>
          <td class="paramname"><em>model</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="classC2DRegTimeStep.html">C2DRegTimeStep</a> &amp;&#160;</td>
          <td class="paramname"><em>time_step</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="group__registration.html#gad5b721e5c2ab2306fa7c812483e964ef">C2DTransformCreator</a> &amp;&#160;</td>
          <td class="paramname"><em>trans_factory</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">float&#160;</td>
          <td class="paramname"><em>outer_epsilon</em>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
</div><div class="memdoc">
<p>The constructor: </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">start_size</td><td>an approximate size for the lowest resolution in the multi-resolution registration </td></tr>
    <tr><td class="paramname">max_iter</td><td>maximum number of times steps to be used at each multi-grid level </td></tr>
    <tr><td class="paramname">model</td><td>the registration model (e.g.- navier for linear elasticity operator) </td></tr>
    <tr><td class="paramname">time_step</td><td>the time step model (e.g. fluid to let the model operator work on the velocity field instead of the deformation field) </td></tr>
    <tr><td class="paramname">trans_factory</td><td>factory for creation of transformations </td></tr>
    <tr><td class="paramname">outer_epsilon</td><td>a relative cost function value per multi-grid level to stop registration </td></tr>
  </table>
  </dd>
</dl>

</div>
</div>
<a class="anchor" id="ad3c2258d95ab95ed18c5dd081fc473d9"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="group__registration.html#ga9f4372120670271190100ff624acb536">P2DTransformation</a> C2DMultiImageNonrigidRegister::operator() </td>
          <td>(</td>
          <td class="paramtype">C2DImageFatCostList &amp;&#160;</td>
          <td class="paramname"><em>cost</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="2d_2interpolator_8hh.html#adc4b05bca3ac9028ff7b87bbffce65da">P2DInterpolatorFactory</a>&#160;</td>
          <td class="paramname"><em>ipf</em>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
</div><div class="memdoc">
<p>The registration operator that does the registration </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">cost</td><td>cost function combination to be optimized </td></tr>
    <tr><td class="paramname">ipf</td><td>interpolator to be used for image transformations </td></tr>
  </table>
  </dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>a vector field describing the registration </dd></dl>

</div>
</div>
<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="2d_2register_8hh_source.html">2d/register.hh</a></li>
</ul>
</div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated on Sat Jan 25 2014 23:52:08 by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.6
</small></address>
</body>
</html>