/usr/include/blasr/algorithms/alignment/GraphPaper.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | #ifndef GRAPH_PAPER_HPP_
#define GRAPH_PAPER_HPP_
#include "datastructures/alignment/Path.h"
#include "matrix/FlatMatrix.hpp"
template<typename T_Point>
bool SetBounds(vector<T_Point> &points,
DNALength &minPos,
DNALength &maxPos,
int axis);
inline int GetIndex(DNALength pos,
DNALength minPos,
DNALength maxPos,
int nBins);
template<typename T_Point>
int GraphPaper(vector<T_Point> &points,
int nRows, int nCols,
FlatMatrix2D<int> &bins,
FlatMatrix2D<int> &scoreMat,
FlatMatrix2D<Arrow> &pathMat,
vector<bool> &onOptPath);
template<typename T_Point>
void RemoveOffOpt(vector<T_Point> &points, vector<bool> &optPath);
#include "GraphPaperImpl.hpp"
#endif
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