/usr/include/blasr/datastructures/anchoring/ClusterList.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | #ifndef _BLASR_CLUSTER_LIST_HPP_
#define _BLASR_CLUSTER_LIST_HPP_
#include <vector>
#include "DNASequence.hpp"
class ClusterList {
public:
std::vector<int> numBases;
std::vector<int> numAnchors;
std::vector<unsigned int> startPos;
std::vector<int> indices;
int lowerSizeLimit;
int lowerSizeLimitNumAnchors;
DNALength curp, cure; // cur - p, and cur - e.
int curIndex;
bool onContigStart;
ClusterList();
void Clear();
bool Store(int n, DNALength p, DNALength e, int b);
void ResetCoordinates();
};
#endif
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