/usr/include/blasr/suffixarray/SuffixArrayTypes.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | #ifndef _BLASR_SUFFIX_ARRAY_TYPES_HPP_
#define _BLASR_SUFFIX_ARRAY_TYPES_HPP_
#include <vector>
#include "SuffixArray.hpp"
#include "SharedSuffixArray.hpp"
#include "CompressedSequence.hpp"
#include "Compare4BitCompressed.hpp"
#include "FASTASequence.hpp"
typedef SuffixArray<Nucleotide, std::vector<int> > DNASuffixArray;
typedef SuffixArray<Nucleotide, std::vector<int>,
Compare4BitCompressed<Nucleotide>,
CompressedDNATuple<FASTASequence> > CompressedDNASuffixArray;
#endif // _BLASR_SUFFIX_ARRAY_TYPES_HPP_
|