This file is indexed.

/usr/include/deal.II/multigrid/mg_constrained_dofs.h is in libdeal.ii-dev 8.1.0-6ubuntu1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
// ---------------------------------------------------------------------
// $Id: mg_constrained_dofs.h 31075 2013-10-02 17:51:27Z heister $
//
// Copyright (C) 2010 - 2013 by the deal.II authors
//
// This file is part of the deal.II library.
//
// The deal.II library is free software; you can use it, redistribute
// it, and/or modify it under the terms of the GNU Lesser General
// Public License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
// The full text of the license can be found in the file LICENSE at
// the top level of the deal.II distribution.
//
// ---------------------------------------------------------------------

#ifndef __deal2__mg_constraints_h
#define __deal2__mg_constraints_h

#include <deal.II/base/config.h>
#include <deal.II/base/subscriptor.h>

#include <deal.II/multigrid/mg_tools.h>

#include <vector>
#include <set>

DEAL_II_NAMESPACE_OPEN

template <int dim, int spacedim> class DoFHandler;
template <int dim> struct FunctionMap;


/**
 * Collection of boundary constraints and refinement edge constraints
 * for level vectors.
 *
 * @ingroup mg
 */
class MGConstrainedDoFs : public Subscriptor
{
public:

  typedef std::vector<std::set<types::global_dof_index> >::size_type size_dof;
  /**
   * Fill the internal data
   * structures with values
   * extracted from the dof
   * handler.
   *
   * This function leaves
   * #boundary_indices empty, since
   * no boundary values are
   * provided.
   */
  template <int dim, int spacedim>
  void initialize(const DoFHandler<dim,spacedim> &dof);

  /**
   * Fill the internal data
   * structures with values
   * extracted from the dof
   * handler, applying the boundary
   * values provided.
   */
  template <int dim, int spacedim>
  void initialize(const DoFHandler<dim,spacedim> &dof,
                  const typename FunctionMap<dim>::type &function_map,
                  const ComponentMask &component_mask = ComponentMask());

  /**
   * Reset the data structures.
   */
  void clear();

  /**
   * Determine whether a dof index is subject to a boundary
   * constraint. (is on boundary of domain)
   */
  bool is_boundary_index (const unsigned int level,
                          const types::global_dof_index index) const;

  /**
   * Determine whether a dof index is at an edge that is not a
   * refinement edge.
   */
// TODO: remove
  bool non_refinement_edge_index (const unsigned int level,
                                  const types::global_dof_index index) const;

  /**
   * Determine whether a dof index is at the refinement edge.
   */
  bool at_refinement_edge (const unsigned int level,
                           const types::global_dof_index index) const;

  /**
   * Determine whether a dof index is at the refinement edge and
   * subject to a boundary constraint .
   * = is_boundary_index() && at_refinement_edge()
   */
  bool at_refinement_edge_boundary (const unsigned int level,
                                    const types::global_dof_index index) const;

  /**
   * Return the indices of dofs for each level that lie on the
   * boundary of the domain.
   */
// TODO: remove
  const std::vector<std::set<types::global_dof_index> > &
  get_boundary_indices () const;

  /**
   * Return the indices of dofs for each level that lie on the
   * boundary of the domain.
   */
  // TODO: remove
  const std::vector<std::set<types::global_dof_index> > &
  get_non_refinement_edge_indices () const;

  /**
   * Return the indices of dofs for each level that lie on the
   * refinement edge (i.e. are on faces between cells of this level
   * and cells on the level below).
   */
  // TODO: remove
  const std::vector<std::vector<bool> > &
  get_refinement_edge_indices () const;

  /**
   * Return the indices of dofs for each level that are in the
   * intersection of the sets returned by get_boundary_indices() and
   * get_refinement_edge_indices().
   */
  // TODO: remove
  const std::vector<std::vector<bool> > &
  get_refinement_edge_boundary_indices () const;

  /**
   * Return if boundary_indices need to be set or not.
   */

  bool set_boundary_values () const;

  /**
   * Return if the finite element requires continuity across
   * refinement edges.
   */
  bool continuity_across_refinement_edges () const;
private:

  /**
   * The indices of boundary dofs for each level.
   */
  std::vector<std::set<types::global_dof_index> > boundary_indices;

  /**
   * The degrees of freedom on egdges that are not a refinement edge
   * between a level and coarser cells.
   */
  std::vector<std::set<types::global_dof_index> > non_refinement_edge_indices;

  /**
   * The degrees of freedom on the refinement edge between a level and
   * coarser cells.
   */
  std::vector<std::vector<bool> > refinement_edge_indices;

  /**
   * The degrees of freedom on the refinement edge between a level and
   * coarser cells, which are also on the boundary.
   *
   * This is a subset of #refinement_edge_indices.
   */
  std::vector<std::vector<bool> > refinement_edge_boundary_indices;
};


template <int dim, int spacedim>
inline
void
MGConstrainedDoFs::initialize(const DoFHandler<dim,spacedim> &dof)
{
  const unsigned int nlevels = dof.get_tria().n_global_levels();
  refinement_edge_indices.resize(nlevels);
  refinement_edge_boundary_indices.resize(nlevels);
  non_refinement_edge_indices.resize(nlevels);
  for (unsigned int l=0; l<nlevels; ++l)
    {
      refinement_edge_indices[l].resize(dof.n_dofs(l));
      refinement_edge_boundary_indices[l].resize(dof.n_dofs(l));
    }
  MGTools::extract_inner_interface_dofs (dof, refinement_edge_indices,
                                         refinement_edge_boundary_indices);

  MGTools::extract_non_interface_dofs (dof, non_refinement_edge_indices);
}


template <int dim, int spacedim>
inline
void
MGConstrainedDoFs::initialize(
  const DoFHandler<dim,spacedim> &dof,
  const typename FunctionMap<dim>::type &function_map,
  const ComponentMask &component_mask)
{
  const unsigned int nlevels = dof.get_tria().n_global_levels();
  boundary_indices.resize(nlevels);
  refinement_edge_indices.resize(nlevels);
  refinement_edge_boundary_indices.resize(nlevels);
  non_refinement_edge_indices.resize(nlevels);

  for (unsigned int l=0; l<nlevels; ++l)
    {
      boundary_indices[l].clear();
      refinement_edge_indices[l].resize(dof.n_dofs(l));
      refinement_edge_boundary_indices[l].resize(dof.n_dofs(l));
    }

  MGTools::make_boundary_list (dof, function_map, boundary_indices, component_mask);
  MGTools::extract_inner_interface_dofs (dof, refinement_edge_indices,
                                         refinement_edge_boundary_indices);
  MGTools::extract_non_interface_dofs (dof, non_refinement_edge_indices);
}


inline
void
MGConstrainedDoFs::clear()
{
  for (unsigned int l=0; l<boundary_indices.size(); ++l)
    boundary_indices[l].clear();

  for (unsigned int l=0; l<refinement_edge_indices.size(); ++l)
    refinement_edge_indices[l].clear();

  for (unsigned int l=0; l<refinement_edge_boundary_indices.size(); ++l)
    refinement_edge_boundary_indices[l].clear();

  for (unsigned int l=0; l<non_refinement_edge_indices.size(); ++l)
    non_refinement_edge_indices[l].clear();
}


inline
bool
MGConstrainedDoFs::is_boundary_index (const unsigned int level,
                                      const types::global_dof_index index) const
{
  AssertIndexRange(level, boundary_indices.size());
  if (boundary_indices[level].find(index) != boundary_indices[level].end())
    return true;
  else
    return false;
}

inline
bool
MGConstrainedDoFs::non_refinement_edge_index (const unsigned int level,
                                              const types::global_dof_index index) const
{
  AssertIndexRange(level, non_refinement_edge_indices.size());

  if (non_refinement_edge_indices[level].find(index) != non_refinement_edge_indices[level].end())
    return true;
  else
    return false;
}

inline
bool
MGConstrainedDoFs::at_refinement_edge (const unsigned int level,
                                       const types::global_dof_index index) const
{
  AssertIndexRange(level, refinement_edge_indices.size());
  AssertIndexRange(index, refinement_edge_indices[level].size());

  return refinement_edge_indices[level][index];
}


inline
bool
MGConstrainedDoFs::at_refinement_edge_boundary (const unsigned int level,
                                                const types::global_dof_index index) const
{
  AssertIndexRange(level, refinement_edge_boundary_indices.size());
  AssertIndexRange(index, refinement_edge_boundary_indices[level].size());

  return refinement_edge_boundary_indices[level][index];
}

inline
const std::vector<std::set<types::global_dof_index> > &
MGConstrainedDoFs::get_boundary_indices () const
{
  return boundary_indices;
}

inline
const std::vector<std::set<types::global_dof_index> > &
MGConstrainedDoFs::get_non_refinement_edge_indices () const
{
  return non_refinement_edge_indices;
}

inline
const std::vector<std::vector<bool> > &
MGConstrainedDoFs::get_refinement_edge_indices () const
{
  return refinement_edge_indices;
}

inline
const std::vector<std::vector<bool> > &
MGConstrainedDoFs::get_refinement_edge_boundary_indices () const
{
  return refinement_edge_boundary_indices;
}

inline
bool
MGConstrainedDoFs::set_boundary_values () const
{
  const bool boundary_values_need_to_be_set
    = boundary_indices.size()!=0;
  return boundary_values_need_to_be_set;
}

inline
bool
MGConstrainedDoFs::continuity_across_refinement_edges () const
{
  bool is_continuous = false;
  for (unsigned int l=0; l<refinement_edge_indices.size(); ++l)
    for (unsigned int i=0; i<refinement_edge_indices[l].size(); ++i)
      if (refinement_edge_indices[l][i])
        {
          is_continuous = true;
          return is_continuous;
        }
  return is_continuous;
}

DEAL_II_NAMESPACE_CLOSE

#endif