/usr/lib/R/site-library/IRanges/extdata/ce2chrM.fa.out is in r-bioc-iranges 2.4.1-1.
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The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | SW perc perc perc query position in query matching repeat position in repeat
score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID
210 19.5 0.0 7.2 chrM 433 515 (13279) + T-rich Low_complexity 2 78 (0) 1
28 6.1 0.0 0.0 chrM 543 591 (13203) + AT_rich Low_complexity 1 49 (0) 2
34 2.4 0.0 0.0 chrM 1345 1385 (12409) + AT_rich Low_complexity 1 41 (0) 3
26 8.2 0.0 0.0 chrM 2464 2524 (11270) + AT_rich Low_complexity 1 61 (0) 4
239 21.5 0.8 9.7 chrM 2566 2699 (11095) + T-rich Low_complexity 3 124 (0) 5
27 7.3 0.0 0.0 chrM 3922 3976 (9818) + AT_rich Low_complexity 1 55 (0) 6
37 5.7 0.0 3.3 chrM 4206 4296 (9498) + AT_rich Low_complexity 1 88 (0) 7
22 5.6 0.0 0.0 chrM 4759 4794 (9000) + AT_rich Low_complexity 1 36 (0) 8
28 2.9 0.0 0.0 chrM 5437 5471 (8323) + AT_rich Low_complexity 1 35 (0) 9
228 18.5 1.9 0.0 chrM 5538 5591 (8203) + T-rich Low_complexity 5 59 (0) 10
22 0.0 0.0 0.0 chrM 6584 6605 (7189) + AT_rich Low_complexity 1 22 (0) 11
36 9.7 0.0 0.0 chrM 6699 6811 (6983) + AT_rich Low_complexity 1 113 (0) 12
21 8.9 0.0 0.0 chrM 6978 7033 (6761) + AT_rich Low_complexity 1 56 (0) 13
26 8.8 0.0 0.0 chrM 7521 7588 (6206) + AT_rich Low_complexity 1 68 (0) 14
30 8.3 0.0 0.0 chrM 7794 7865 (5929) + AT_rich Low_complexity 1 72 (0) 15
21 0.0 0.0 0.0 chrM 8054 8074 (5720) + AT_rich Low_complexity 1 21 (0) 16
39 5.0 0.0 0.0 chrM 10561 10620 (3174) + AT_rich Low_complexity 1 60 (0) 17
207 16.8 6.6 4.7 chrM 10656 10761 (3033) + (TTTAA)n Simple_repeat 1 108 (0) 18
32 2.6 0.0 0.0 chrM 10947 10985 (2809) + AT_rich Low_complexity 1 39 (0) 19
25 0.0 0.0 0.0 chrM 11805 11829 (1965) + AT_rich Low_complexity 1 25 (0) 20
21 3.6 0.0 0.0 chrM 12027 12054 (1740) + AT_rich Low_complexity 1 28 (0) 21
24 3.2 0.0 0.0 chrM 12320 12350 (1444) + AT_rich Low_complexity 1 31 (0) 22
27 8.1 0.0 0.0 chrM 12727 12788 (1006) + AT_rich Low_complexity 1 62 (0) 23
22 9.9 0.0 0.0 chrM 12883 12953 (841) + AT_rich Low_complexity 1 71 (0) 24
60 7.2 0.0 1.9 chrM 13006 13161 (633) + AT_rich Low_complexity 1 153 (0) 25
28 9.1 0.0 0.0 chrM 13193 13269 (525) + AT_rich Low_complexity 1 77 (0) 26
468 6.9 9.4 0.0 chrM 13358 13516 (278) + (TA)n Simple_repeat 1 174 (0) 27
344 8.5 8.3 2.4 chrM 13491 13658 (136) + (TTATA)n Simple_repeat 2 179 (0) 28
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