/usr/lib/R/site-library/phyloseq/extdata/study_gp.txt is in r-bioc-phyloseq 1.22.3-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | #SampleID Primer Final_Barcode Barcode_truncated_plus_T Barcode_full_length SampleType Description
CL3 ILBC_01 AACGCA TGCGTT CTAGCGTGCGT Soil "Calhoun South Carolina Pine soil, pH 4.9"
CC1 ILBC_02 AACTCG CGAGTT CATCGACGAGT Soil "Cedar Creek Minnesota, grassland, pH 6.1"
SV1 ILBC_03 AACTGT ACAGTT GTACGCACAGT Soil "Sevilleta new Mexico, desert scrub, pH 8.3"
M31Fcsw ILBC_04 AAGAGA TCTCTT TCGACATCTCT Feces "M3, Day 1, fecal swab, whole body study"
M11Fcsw ILBC_05 AAGCTG CAGCTT CGACTGCAGCT Feces "M1, Day 1, fecal swab, whole body study "
F11Fcsw ILBC_06 AATCAG CTGATT ACGAGACTGAT Feces "F1, Day 1, fecal swab, whole body study "
M31Plmr ILBC_07 AATCGT ACGATT CGAGTCACGAT Skin "M3, Day 1, right palm, whole body study"
M11Plmr ILBC_08 ACACAC GTGTGT GCCATAGTGTG Skin "M1, Day 1, right palm, whole body study "
F21Plmr ILBC_09 ACACAT ATGTGT GTAGACATGTG Skin "F1, Day 1, right palm, whole body study "
M31Tong ILBC_10 ACACGA TCGTGT TGTGGCTCGTG Tongue "M3, Day 1, tongue, whole body study "
M11Tong ILBC_11 ACACGG CCGTGT TAGACACCGTG Tongue "M1, Day 1, tongue, whole body study "
F11Tong ILBC_12 ACACTA TAGTGT CGGATCTAGTG Tongue "F1, Day 1, tongue, whole body study "
LMEpi24M ILBC_13 ACACTG CAGTGT CATGAACAGTG Freshwater "Lake Mendota Minnesota, 24 meter epilimnion "
SLEpi20M ILBC_15 ACAGAG CTCTGT AGCCGACTCTG Freshwater "Sparkling Lake Wisconsin, 20 meter eplimnion"
AQC1cm ILBC_16 ACAGCA TGCTGT GACCACTGCTG Freshwater (creek) "Allequash Creek, 0-1cm depth"
AQC4cm ILBC_17 ACAGCT AGCTGT CAAGCTAGCTG Freshwater (creek) "Allequash Creek, 3-4 cm depth"
AQC7cm ILBC_18 ACAGTG CACTGT ATGAAGCACTG Freshwater (creek) "Allequash Creek, 6-7 cm depth"
NP2 ILBC_19 ACAGTT AACTGT TCGCGCAACTG Ocean "Newport Pier, CA surface water, Time 1"
NP3 ILBC_20 ACATCA TGATGT GCTAAGTGATG Ocean "Newport Pier, CA surface water, Time 2"
NP5 ILBC_21 ACATGA TCATGT GAACGATCATG Ocean "Newport Pier, CA surface water, Time 3"
TRRsed1 ILBC_22 ACATGT ACATGT CACGTGACATG Sediment (estuary) "Tijuana River Reserve, depth 1"
TRRsed2 ILBC_23 ACATTC GAATGT TGCGCTGAATG Sediment (estuary) "Tijuana River Reserve, depth 2"
TRRsed3 ILBC_24 ACCACA TGTGGT GATGTATGTGG Sediment (estuary) "Tijuana River Reserve, depth 2"
TS28 ILBC_25 ACCAGA TCTGGT GCATCGTCTGG Feces Twin #1
TS29 ILBC_26 ACCAGC GCTGGT CTAGTCGCTGG Feces Twin #2
Even1 ILBC_27 ACCGCA TGCGGT TGACTCTGCGG Mock Even1
Even2 ILBC_28 ACCTCG CGAGGT TCTGATCGAGG Mock Even2
Even3 ILBC_29 ACCTGT ACAGGT AGAGAGACAGG Mock Even3
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