About

This package is 4.2 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/r/r-bioc-phyloseq/r-bioc-phyloseq_1.22.3-1_all.deb .

View its full control file here: debian/control.

Description

GNU R handling and analysis of high-throughput microbiome census data

Relations

This package depends on: r-base-core (>= 3.4.2-1ubuntu4), r-api-3.4, r-cran-ade4 (>= 1.7-4), r-cran-ape (>= 5.0), r-bioc-biobase (>= 2.36.2), r-bioc-biocgenerics (>= 0.22.0), r-bioc-biomformat (>= 1.0.0), r-bioc-biostrings (>= 2.40.0), r-cran-cluster (>= 2.0.4), r-cran-data.table (>= 1.10.4), r-cran-foreach (>= 1.4.3), r-cran-ggplot2 (>= 2.1.0), r-cran-igraph (>= 1.0.1), r-bioc-multtest (>= 2.28.0), r-cran-plyr (>= 1.8.3), r-cran-reshape2 (>= 1.4.1), r-cran-scales (>= 0.4.0), r-cran-vegan (>= 2.4).

This package does not recommend any other package.

This package suggests: r-bioc-deseq2 (>= 1.16.1), r-bioc-genefilter (>= 1.58), r-cran-knitr (>= 1.16), r-bioc-metagenomeseq (>= 1.14), r-cran-testthat (>= 1.0.2).

This package does not conflict with any other package.

Package Contents

This package is indexed.

r-bioc-phyloseq 1.22.3-1 is in ubuntu - bionic / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/R/ root:root 0o755
/usr/lib/R/site-library/ root:root 0o755
/usr/lib/R/site-library/phyloseq/ root:root 0o755
/usr/lib/R/site-library/phyloseq/CITATION text/plain root:root 0o644 606 bytes
/usr/lib/R/site-library/phyloseq/data/ root:root 0o755
/usr/lib/R/site-library/phyloseq/data/datalist text/plain root:root 0o644 44 bytes
/usr/lib/R/site-library/phyloseq/data/enterotype.RData application/x-xz root:root 0o644 190.7 KB
/usr/lib/R/site-library/phyloseq/data/esophagus.RData application/x-xz root:root 0o644 1.8 KB
/usr/lib/R/site-library/phyloseq/data/GlobalPatterns.RData application/x-xz root:root 0o644 425.4 KB
/usr/lib/R/site-library/phyloseq/data/soilrep.RData application/x-xz root:root 0o644 104.9 KB
/usr/lib/R/site-library/phyloseq/DESCRIPTION text/plain root:root 0o644 2.1 KB
/usr/lib/R/site-library/phyloseq/doc/ root:root 0o755
/usr/lib/R/site-library/phyloseq/doc/index.html text/html root:root 0o644 3.2 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.html text/html root:root 0o644 3.5 MB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.R text/plain root:root 0o644 9.2 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.Rmd text/plain root:root 0o644 39.2 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.html text/html root:root 0o644 1.1 MB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.R text/plain root:root 0o644 4.4 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.Rmd text/plain root:root 0o644 36.1 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.html text/html root:root 0o644 1.1 MB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.R text/plain root:root 0o644 1022 bytes
/usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.Rmd text/plain root:root 0o644 21.2 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.html text/html root:root 0o644 775.0 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.R text/plain root:root 0o644 3.1 KB
/usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.Rmd text/plain root:root 0o644 9.3 KB
/usr/lib/R/site-library/phyloseq/doc/Unweighted_UniFrac.RData application/gzip root:root 0o644 2.7 KB
/usr/lib/R/site-library/phyloseq/extdata/ root:root 0o755
/usr/lib/R/site-library/phyloseq/extdata/biom-refseq.fasta text/plain root:root 0o644 1.7 KB
/usr/lib/R/site-library/phyloseq/extdata/biom-tree.phy text/plain root:root 0o644 143 bytes
/usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.list.gz application/gzip root:root 0o644 4.5 KB
/usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.shared.gz application/gzip root:root 0o644 2.3 KB
/usr/lib/R/site-library/phyloseq/extdata/esophagus.good.groups.gz application/gzip root:root 0o644 1.3 KB
/usr/lib/R/site-library/phyloseq/extdata/esophagus.tree.gz application/gzip root:root 0o644 4.9 KB
/usr/lib/R/site-library/phyloseq/extdata/gg13-5-73.tree.gz application/gzip root:root 0o644 3.4 KB
/usr/lib/R/site-library/phyloseq/extdata/gp500-pycogent.py text/x-python root:root 0o644 1.0 KB
/usr/lib/R/site-library/phyloseq/extdata/gp500test.env.txt text/plain root:root 0o644 47.7 KB
/usr/lib/R/site-library/phyloseq/extdata/gp500test.tree text/plain root:root 0o644 16.3 KB
/usr/lib/R/site-library/phyloseq/extdata/gp500-uuf.csv text/plain root:root 0o644 19.1 KB
/usr/lib/R/site-library/phyloseq/extdata/gp500-wuf.csv text/plain root:root 0o644 19.1 KB
/usr/lib/R/site-library/phyloseq/extdata/gp500-wufu.csv text/plain root:root 0o644 19.1 KB
/usr/lib/R/site-library/phyloseq/extdata/GP_otu_table_rand_short.txt.gz application/gzip root:root 0o644 13.0 KB
/usr/lib/R/site-library/phyloseq/extdata/GP_tree_rand_short.newick.gz application/gzip root:root 0o644 7.0 KB
/usr/lib/R/site-library/phyloseq/extdata/master_map.txt text/plain root:root 0o644 2.4 KB
/usr/lib/R/site-library/phyloseq/extdata/min_dense_otu_table.biom text/plain root:root 0o644 1.1 KB
/usr/lib/R/site-library/phyloseq/extdata/min_sparse_otu_table.biom text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/phyloseq/extdata/mothur_example.cons.taxonomy.gz application/gzip root:root 0o644 536 bytes
/usr/lib/R/site-library/phyloseq/extdata/qiime500-refseq.fasta text/plain root:root 0o644 187.0 KB
/usr/lib/R/site-library/phyloseq/extdata/rformat_dist_0.03.txt.gz application/gzip root:root 0o644 26.1 KB
/usr/lib/R/site-library/phyloseq/extdata/rich_dense_otu_table.biom text/plain root:root 0o644 3.2 KB
/usr/lib/R/site-library/phyloseq/extdata/rich_sparse_otu_table.biom text/plain root:root 0o644 3.4 KB
/usr/lib/R/site-library/phyloseq/extdata/study_1457_split_library_seqs_and_mapping.zip application/zip root:root 0o644 157.4 KB
/usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.tar.gz application/gzip root:root 0o644 4.9 KB
/usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.zip application/zip root:root 0o644 5.1 KB
/usr/lib/R/site-library/phyloseq/extdata/study_gp.txt text/plain root:root 0o644 2.4 KB
/usr/lib/R/site-library/phyloseq/extdata/usearch.uc text/plain root:root 0o644 11.8 KB
/usr/lib/R/site-library/phyloseq/help/ root:root 0o755
/usr/lib/R/site-library/phyloseq/help/aliases.rds application/gzip root:root 0o644 2.5 KB
/usr/lib/R/site-library/phyloseq/help/AnIndex text/plain root:root 0o644 11.6 KB
/usr/lib/R/site-library/phyloseq/help/paths.rds application/gzip root:root 0o644 1.3 KB
/usr/lib/R/site-library/phyloseq/help/phyloseq.rdb application/octet-stream root:root 0o644 387.1 KB
/usr/lib/R/site-library/phyloseq/help/phyloseq.rdx application/gzip root:root 0o644 3.0 KB
/usr/lib/R/site-library/phyloseq/html/ root:root 0o755
/usr/lib/R/site-library/phyloseq/html/00Index.html text/html root:root 0o644 30.5 KB
/usr/lib/R/site-library/phyloseq/html/R.css text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/phyloseq/INDEX text/plain root:root 0o644 9.7 KB
/usr/lib/R/site-library/phyloseq/Meta/ root:root 0o755
/usr/lib/R/site-library/phyloseq/Meta/data.rds application/gzip root:root 0o644 276 bytes
/usr/lib/R/site-library/phyloseq/Meta/features.rds application/gzip root:root 0o644 112 bytes
/usr/lib/R/site-library/phyloseq/Meta/hsearch.rds application/gzip root:root 0o644 5.8 KB
/usr/lib/R/site-library/phyloseq/Meta/links.rds application/gzip root:root 0o644 3.1 KB
/usr/lib/R/site-library/phyloseq/Meta/nsInfo.rds application/gzip root:root 0o644 2.2 KB
/usr/lib/R/site-library/phyloseq/Meta/package.rds application/gzip root:root 0o644 1.7 KB
/usr/lib/R/site-library/phyloseq/Meta/Rd.rds application/gzip root:root 0o644 6.4 KB
/usr/lib/R/site-library/phyloseq/Meta/vignette.rds application/gzip root:root 0o644 349 bytes
/usr/lib/R/site-library/phyloseq/NAMESPACE text/plain root:root 0o644 7.0 KB
/usr/lib/R/site-library/phyloseq/NEWS text/plain root:root 0o644 46.2 KB
/usr/lib/R/site-library/phyloseq/R/ root:root 0o755
/usr/lib/R/site-library/phyloseq/R/phyloseq text/plain root:root 0o644 1.0 KB
/usr/lib/R/site-library/phyloseq/R/phyloseq.rdb application/octet-stream root:root 0o644 394.7 KB
/usr/lib/R/site-library/phyloseq/R/phyloseq.rdx application/gzip root:root 0o644 5.1 KB
/usr/lib/R/site-library/phyloseq/scripts/ root:root 0o755
/usr/lib/R/site-library/phyloseq/scripts/installer.R text/plain root:root 0o644 1.8 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/r-bioc-phyloseq/ root:root 0o755
/usr/share/doc/r-bioc-phyloseq/changelog.Debian.gz application/gzip root:root 0o644 549 bytes
/usr/share/doc/r-bioc-phyloseq/copyright text/plain root:root 0o644 34.9 KB
/usr/share/doc/r-bioc-phyloseq/README.test text/plain root:root 0o644 279 bytes
/usr/share/doc/r-bioc-phyloseq/run-unit-test text/x-shellscript root:root 0o644 318 bytes
/usr/share/doc/r-bioc-phyloseq/tests/ root:root 0o755
/usr/share/doc/r-bioc-phyloseq/tests/testthat/ root:root 0o755
/usr/share/doc/r-bioc-phyloseq/tests/testthat-phyloseq.R text/plain root:root 0o644 980 bytes
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-distance.R.gz application/gzip root:root 0o644 1.5 KB
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-IO.R.gz application/gzip root:root 0o644 4.4 KB
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-merge.R.gz application/gzip root:root 0o644 3.8 KB
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-phyloseq.R.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-plot.R.gz application/gzip root:root 0o644 4.7 KB
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-rarefy.R text/plain root:root 0o644 3.3 KB
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-subset.R.gz application/gzip root:root 0o644 1.4 KB
/usr/share/doc/r-bioc-phyloseq/tests/testthat/test-transform.R.gz application/gzip root:root 0o644 1.4 KB