This file is indexed.

/usr/ is in phast 1.4+dfsg-1.

This file is owned by root:root, with mode 0o755.

File Mime Type Owner Mode Size
..
/usr/bin/ root:root 0o755
/usr/bin/all_dists application/x-sharedlib root:root 0o755 618.1 KB
/usr/bin/base_evolve application/x-sharedlib root:root 0o755 651.7 KB
/usr/bin/chooseLines application/x-sharedlib root:root 0o755 614.1 KB
/usr/bin/clean_genes application/x-sharedlib root:root 0o755 652.9 KB
/usr/bin/consEntropy application/x-sharedlib root:root 0o755 619.8 KB
/usr/share/phast/data/ root:root 0o755
/usr/bin/convert_coords application/x-sharedlib root:root 0o755 618.1 KB
/usr/bin/display_rate_matrix application/x-sharedlib root:root 0o755 638.1 KB
/usr/bin/dless application/x-sharedlib root:root 0o755 730.8 KB
/usr/bin/dlessP application/x-sharedlib root:root 0o755 779.7 KB
/usr/bin/draw_tree application/x-sharedlib root:root 0o755 614.1 KB
/usr/bin/eval_predictions application/x-sharedlib root:root 0o755 626.1 KB
/usr/bin/exoniphy application/x-sharedlib root:root 0o755 704.6 KB
/usr/bin/hmm_train application/x-sharedlib root:root 0o755 662.1 KB
/usr/bin/hmm_tweak application/x-sharedlib root:root 0o755 662.1 KB
/usr/bin/hmm_view application/x-sharedlib root:root 0o755 658.1 KB
/usr/bin/indelFit application/x-sharedlib root:root 0o755 644.1 KB
/usr/bin/indelHistory application/x-sharedlib root:root 0o755 631.7 KB
/usr/bin/maf_parse application/x-sharedlib root:root 0o755 650.8 KB
/usr/bin/makeHKY application/x-sharedlib root:root 0o755 615.1 KB
/usr/bin/modFreqs application/x-sharedlib root:root 0o755 614.5 KB
/usr/bin/msa_diff application/x-sharedlib root:root 0o755 619.1 KB
/usr/bin/msa_split application/x-sharedlib root:root 0o755 635.0 KB
/usr/bin/msa_view application/x-sharedlib root:root 0o755 639.3 KB
/usr/bin/pbsDecode application/x-sharedlib root:root 0o755 639.3 KB
/usr/bin/pbsEncode application/x-sharedlib root:root 0o755 639.3 KB
/usr/bin/pbsScoreMatrix application/x-sharedlib root:root 0o755 642.2 KB
/usr/bin/pbsTrain application/x-sharedlib root:root 0o755 643.8 KB
/usr/bin/phast application/x-sharedlib root:root 0o755 6.9 KB
/usr/bin/phastBias application/x-sharedlib root:root 0o755 760.7 KB
/usr/bin/phastCons application/x-sharedlib root:root 0o755 756.5 KB
/usr/bin/phastMotif application/x-sharedlib root:root 0o755 674.1 KB
/usr/bin/phastOdds application/x-sharedlib root:root 0o755 664.3 KB
/usr/bin/phyloBoot application/x-sharedlib root:root 0o755 661.4 KB
/usr/bin/phyloFit application/x-sharedlib root:root 0o755 733.2 KB
/usr/bin/phyloP application/x-sharedlib root:root 0o755 769.9 KB
/usr/bin/prequel application/x-sharedlib root:root 0o755 653.9 KB
/usr/bin/refeature application/x-sharedlib root:root 0o755 618.6 KB
/usr/bin/stringiphy application/x-sharedlib root:root 0o755 618.1 KB
/usr/bin/treeGen application/x-sharedlib root:root 0o755 623.4 KB
/usr/bin/tree_doctor application/x-sharedlib root:root 0o755 626.7 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/phast/ root:root 0o755
/usr/share/doc/phast/changelog.Debian.gz application/gzip root:root 0o644 154 bytes
/usr/share/doc/phast/copyright text/plain root:root 0o644 2.0 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/all_dists.1.gz application/gzip root:root 0o644 543 bytes
/usr/share/man/man1/base_evolve.1.gz application/gzip root:root 0o644 826 bytes
/usr/share/man/man1/chooseLines.1.gz application/gzip root:root 0o644 291 bytes
/usr/share/man/man1/clean_genes.1.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/consEntropy.1.gz application/gzip root:root 0o644 874 bytes
/usr/share/man/man1/convert_coords.1.gz application/gzip root:root 0o644 694 bytes
/usr/share/man/man1/display_rate_matrix.1.gz application/gzip root:root 0o644 1.3 KB
/usr/share/man/man1/dless.1.gz application/gzip root:root 0o644 1.7 KB
/usr/share/man/man1/dlessP.1.gz application/gzip root:root 0o644 801 bytes
/usr/share/man/man1/draw_tree.1.gz application/gzip root:root 0o644 427 bytes
/usr/share/man/man1/eval_predictions.1.gz application/gzip root:root 0o644 1.1 KB
/usr/share/man/man1/exoniphy.1.gz application/gzip root:root 0o644 3.5 KB
/usr/share/man/man1/hmm_train.1.gz application/gzip root:root 0o644 1.2 KB
/usr/share/man/man1/hmm_tweak.1.gz application/gzip root:root 0o644 979 bytes
/usr/share/man/man1/hmm_view.1.gz application/gzip root:root 0o644 575 bytes
/usr/share/man/man1/indelFit.1.gz application/gzip root:root 0o644 818 bytes
/usr/share/man/man1/indelHistory.1.gz application/gzip root:root 0o644 823 bytes
/usr/share/man/man1/maf_parse.1.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/makeHKY.1.gz application/gzip root:root 0o644 575 bytes
/usr/share/man/man1/modFreqs.1.gz application/gzip root:root 0o644 283 bytes
/usr/share/man/man1/msa_diff.1.gz application/gzip root:root 0o644 520 bytes
/usr/share/man/man1/msa_split.1.gz application/gzip root:root 0o644 3.0 KB
/usr/share/man/man1/msa_view.1.gz application/gzip root:root 0o644 5.0 KB
/usr/share/man/man1/pbsDecode.1.gz application/gzip root:root 0o644 575 bytes
/usr/share/man/man1/pbsEncode.1.gz application/gzip root:root 0o644 590 bytes
/usr/share/man/man1/pbsScoreMatrix.1.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man1/pbsTrain.1.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/phast.1.gz application/gzip root:root 0o644 491 bytes
/usr/share/man/man1/phastBias.1.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/phastCons.1.gz application/gzip root:root 0o644 6.6 KB
/usr/share/man/man1/phastMotif.1.gz application/gzip root:root 0o644 1.8 KB
/usr/share/man/man1/phastOdds.1.gz application/gzip root:root 0o644 2.0 KB
/usr/share/man/man1/phyloBoot.1.gz application/gzip root:root 0o644 2.3 KB
/usr/share/man/man1/phyloFit.1.gz application/gzip root:root 0o644 8.2 KB
/usr/share/man/man1/phyloP.1.gz application/gzip root:root 0o644 4.9 KB
/usr/share/man/man1/prequel.1.gz application/gzip root:root 0o644 2.7 KB
/usr/share/man/man1/refeature.1.gz application/gzip root:root 0o644 1.5 KB
/usr/share/man/man1/stringiphy.1.gz application/gzip root:root 0o644 349 bytes
/usr/share/man/man1/treeGen.1.gz application/gzip root:root 0o644 702 bytes
/usr/share/man/man1/tree_doctor.1.gz application/gzip root:root 0o644 2.3 KB
/usr/share/phast/ root:root 0o755
/usr/share/phast/data/exoniphy/ root:root 0o755
/usr/share/phast/data/exoniphy/default-no-cns.cm text/plain root:root 0o644 244 bytes
/usr/share/phast/data/exoniphy/default.cm text/plain root:root 0o644 271 bytes
/usr/share/phast/data/exoniphy/mammals/ root:root 0o755
/usr/share/phast/data/exoniphy/mammals/cftr25_hybrid.nh text/plain root:root 0o644 629 bytes
/usr/share/phast/data/exoniphy/mammals/default-indels-no-cns.hmm text/plain root:root 0o644 664.4 KB
/usr/share/phast/data/exoniphy/mammals/default-indels.hmm text/plain root:root 0o644 715.3 KB
/usr/share/phast/data/exoniphy/mammals/default-no-cns.hmm text/plain root:root 0o644 14.1 KB
/usr/share/phast/data/exoniphy/mammals/default.hmm text/plain root:root 0o644 15.0 KB
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-1.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-2.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-3.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-4.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-5.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-6.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-1.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/r3.ncns.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-2.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-3.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-4.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-5.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-6.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.cds3'ss.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-1.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-2.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-3.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.prestart-1.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.prestart-2.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.prestart-3.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.prestart-4.mod text/plain root:root 0o644 392 bytes
/usr/share/phast/data/exoniphy/mammals/hky.start-1.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.start-2.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.start-3.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.stop-1.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.stop-2.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/hky.stop-3.mod text/plain root:root 0o644 363 bytes
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc1.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc2.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc3.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc4.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc5.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc1.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc2.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc3.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc4.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc5.mod text/plain root:root 0o644 60.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc1.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc2.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc3.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc4.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc5.mod text/plain root:root 0o644 60.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc1.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc2.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc3.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc4.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc5.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.cns.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc1.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc2.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc3.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc4.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc5.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc1.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc2.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc3.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc4.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc5.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.mod text/plain root:root 0o644 48.8 KB
/usr/share/phast/data/exoniphy/models text/plain root:root 0o644 529 bytes
/usr/share/phast/data/exoniphy/models-gc1 text/plain root:root 0o644 549 bytes
/usr/share/phast/data/exoniphy/models-gc2 text/plain root:root 0o644 549 bytes
/usr/share/phast/data/exoniphy/models-gc3 text/plain root:root 0o644 549 bytes
/usr/share/phast/data/exoniphy/models-gc4 text/plain root:root 0o644 549 bytes
/usr/share/phast/data/exoniphy/models-gc5 text/plain root:root 0o644 549 bytes
/usr/share/phast/data/exoniphy/models-no-cns text/plain root:root 0o644 523 bytes
/usr/share/phast/data/exoniphy/models-no-cns-gc1 text/plain root:root 0o644 539 bytes
/usr/share/phast/data/exoniphy/models-no-cns-gc2 text/plain root:root 0o644 539 bytes
/usr/share/phast/data/exoniphy/models-no-cns-gc3 text/plain root:root 0o644 539 bytes
/usr/share/phast/data/exoniphy/models-no-cns-gc4 text/plain root:root 0o644 539 bytes
/usr/share/phast/data/exoniphy/models-no-cns-gc5 text/plain root:root 0o644 539 bytes
/usr/share/phast/data/phastCons/ root:root 0o755
/usr/share/phast/data/phastCons/simple-coding-indels.hmm text/plain root:root 0o644 100.9 KB
/usr/share/phast/data/phastCons/simple-coding.hmm text/plain root:root 0o644 584 bytes