/usr/share/phast/data/exoniphy/default.cm is in phast 1.4+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 | NCATS = 30
CDS 1-3
start_codon 4-6
stop_codon 7-9
5'splice 10-15
3'splice 16-21
CNS 22
prestart 23-26
cds5'ss 27-29
cds3'ss 30
LABELLING_PRECEDENCE=4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,23,24,25,26,27,28,29,30
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