/usr/share/phast/data/exoniphy/mammals/hky.5'splice-3.mod is in phast 1.4+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 | ALPHABET: A C G T
ORDER: 0
SUBST_MOD: HKY85
NRATECATS: 4
ALPHA: 0.791149
BACKGROUND: 0.613119 0.025843 0.333863 0.027176
RATE_MAT:
-0.788222 0.022139 0.742802 0.023281
0.525246 -0.871722 0.286013 0.060463
1.364111 0.022139 -1.409531 0.023281
0.525246 0.057497 0.286013 -0.868756
TREE: (human:0.121834,(mouse:0.036242,rat:0.041592):0.121834);
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